Channel:  Human Pangenome Reference Consortium (HPRC)

166 Articles

Characterizing cytosine methylation of polymorphic human transposable element insertions using human pangenome resources
Zhuo, X., Tomlinson, C., Belter, E. A., Kuntala, P. K., Saintilnord, W. N., Jiang, J., Lindsay, T., Macias, J., Fulton, R. S., Wang, T.
10.1101/2024.11.22.623804 — Posted: 2025-10-20
map3C: a computational tool for processing multiomic single-cell Hi-C data
Galasso, J., Wang, Y., Alber, F., Ernst, J., Luo, C.
10.1101/2025.10.10.681728 — Posted: 2025-10-15
GECSI: Large-scale chromatin state imputation from gene expression
Fu, J., Ernst, J.
10.1101/2025.10.02.679828 — Posted: 2025-10-04
Integrated ambient modeling and genetic demultiplexing of single-cell RNA+ATAC multiome experiments with Ambimux
Alvarez, M., Li, T., Lee, S. H. T., Arasu, U. T., Selvarajan, I., Örd, T., Rahmani, E., Chen, Z. J., Avram, O., Kar, A., Kaminska, D., Männistö, V., Halperin, E., Pihlajamäki, J., Luo, C., Kaikkonen, M. U., Zaitlen, N., Pajukanta, P.
10.1101/2025.08.21.671671 — Posted: 2025-08-26
Perturb-seq reveals distinct responses to pluripotency regulator dosages underlying the control of self-renewal and differentiation
Yan, J., Cho, H. S., Luo, R., Beer, M. A., Li, W., Huangfu, D.
10.1101/2025.08.07.669196 — Posted: 2025-08-08
ToxiTaRGET: a multi-omics resource for toxicant-responsive molecular targets
Kumar, R., Fu, T., Kuntala, P. K., Fu, S., Li, D., Bartolomei, M. S., Walker, C. L., Wang, T., Zhang, B. A.
10.1101/2025.07.28.667228 — Posted: 2025-08-02
An Efficient Graph Algorithm for Diploid Local Ancestry Inference
Jafarzadeh, N., Eizenga, J. M., Paten, B.
10.1101/2025.07.05.662656 — Posted: 2025-07-09
Population differences of chromosome 22q11.2 duplication structure predispose differentially to microdeletion and inversion.
Porubsky, D., Yoo, D., Dishuck, P. C., Koundinya, N., Souche, E., Harvey, W. T., Munson, K. M., Hoekzema, K., Chan, D. D., Leung, T. Y., Santos, M. S., Meynants, S., Swillen, A., Breckpot, J., Tsapalou, V., Hasenfeld, P., Korbel, J. O., Lansdorp, P. M., Vermeesch, J. R., Eichler, E. E.
10.1101/2025.07.04.662981 — Posted: 2025-07-07
Human-specific gene expansions contribute to brain evolution
Soto, D. C., Uribe-Salazar, J. M., Kaya, G., Valdarrago, R., Sekar, A., Haghani, N. K., Hino, K., La, G. N., Mariano, N. A. F., Ingamells, C., Baraban, A. E., Jamal, Z., Turner, T. N., Green, E. D., Simo, S., Quon, G., Andres, A., Dennis, M. Y.
10.1101/2024.09.26.615256 — Posted: 2025-06-25
Comprehensive molecular impact mapping of common and rare variants at GWAS loci
Balderson, B., Tule, S., Okino, M.-L., Rieger, W. J., Corban, S., Jaureguy, J., Palpant, N., Gaulton, K. J., Boden, M., McVicker, G.
10.1101/2025.06.05.658079 — Posted: 2025-06-06

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