Channel:  Human Cell Atlas

188 Articles

scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Ranjan, B., Schmidt, F., Sun, W., Park, J., Honardoost, M. A., Tan, J., Arul Rayan, N., Prabhakar, S.
10.1101/2020.04.22.056473 — Posted: 2020-04-24
Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
Muus, C., Luecken, M. D., Eraslan, G., Waghray, A., Heimberg, G., Sikkema, L., Kobayashi, Y., Vaishnav, E. D., Subramanian, A., Smillie, C., Jagadeesh, K., Duong, E. T., Fiskin, E., Torlai Triglia, E., Becavin, C., Ansari, M., Cai, P., Lin, B., Buchanan, J., Chen, S., Shu, J., Haber, A. L., Chung, H., Montoro, D. T., Adams, T., Aliee, H., Allon, S. J., Andrusivova, Z., Angelidis, I., Ashenberg, O., Bassler, K., Becavin, C., Benhar, I., Bergenstrahle, J., Bergenstrahle, L., Bolt, L., Braun, E., Bui, L. T., Chaffin, M., Chichelnitskiy, E., Chiou, J., Conlon, T. M., Cuoco, M. S., Deprez, M., Fisc
10.1101/2020.04.19.049254 — Posted: 2020-04-21
Cells and gene expression programs in the adult human heart
Litvinukova, M., Talavera-Lopez, C., Maatz, H., Reichart, D., Worth, C. L., Lindberg, E. L., Kanda, M., Polanski, K., Fasouli, E. S., Samari, S., Roberts, K., Tuck, E., Heinig, M., DeLaughter, D., McDonough, B., Wakimoto, H., Gorham, J. M., Nadelmann, E., Mahbubani, K. T., Saeb-Parsy, K., Patone, G., Boyle, J. J., Zhang, H., Zhang, H., Viveiros, A., Oudit, G., Bayraktar, O., Seidman, J. G., Seidman, C., Noseda, M., Hubner, N., Teichmann, S. A.
10.1101/2020.04.03.024075 — Posted: 2020-04-10
Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.
Lavaert, M., Liang, K. L., Vandamme, N., Park, J.-E., Roels, J., Kowalczyk, M. S., Li, B., Ashenberg, O., Tabaka, M., Dionne, D., Tickle, T. L., Slyper, M., Rozenblatt-Rosen, O., Vandekerckhove, B., Leclercq, G., Regev, A., Van Vlierberghe, P., Guilliams, M., Teichmann, S. A., Saeys, Y., Taghon, T.
10.1101/2020.04.07.007237 — Posted: 2020-04-08
SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches
Lukassen, S., Chua, R. L., Trefzer, T., Kahn, N. C., Schneider, M. A., Muley, T., Winter, H., Meister, M., Veith, C., Boots, A. W., Hennig, B. P., Kreuter, M., Conrad, C., Eils, R.
10.1101/2020.03.13.991455 — Posted: 2020-03-30
A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors
Slyper, M., Porter, C. B. M., Ashenberg, O., Waldman, J., Drokhlyansky, E., Wakiro, I., Smillie, C., Smith-Rosario, G., Wu, J., Dionne, D., Vigneau, S., Jane-Valbuena, J., Napolitano, S., Su, M.-J., Patel, A. G., Karlstrom, A., Gritsch, S., Nomura, M., Waghray, A., Gohil, S. H., Tsankov, A. M., Jerby-Arnon, L., Cohen, O., Klughammer, J., Rosen, Y., Gould, J., Li, B., Nguyen, L., Wu, C. J., Izar, B., Haq, R., Hodi, F. S., Yoon, C. H., Hata, A. N., Baker, S. J., Suva, M. L., Bueno, R., Stover, E. H., Matulonis, U. A., Clay, M. R., Dyer, M. A., Collins, N. B., Wagle, N., Rotem, A., Johnson, B. E.
10.1101/761429 — Posted: 2020-03-30
Harnessing Expressed Single Nucleotide Variation and Single Cell RNA Sequencing to Define Immune Cell Chimerism in the Rejecting Kidney Transplant
Malone, A. F., Wu, H., Fronick, C., Fulton, R., Gaut, J. P., Humphreys, B. D.
10.1101/2020.03.10.986075 — Posted: 2020-03-11
CELL ATLAS OF THE HUMAN FOVEA AND PERIPHERAL RETINA
Yan, W., Peng, Y.-R., van Zyl, T., Regev, A., Shekhar, K., Juric, D., Sanes, J.
10.1101/2020.02.11.943779 — Posted: 2020-02-12
Single-cell sequencing of developing human gut reveals transcriptional links to childhood Crohns disease
Elmentaite, R., Ross, A., James, K. R., Ortmann, D., Gomes, T., Roberts, K., Nayak, K., Tuck, L., Bayraktar, O., Heuschkel, R., Vallier, L., Teichmann, S. A., Zilbauer, M.
10.1101/2020.02.06.937110 — Posted: 2020-02-07
A cell atlas of human thymic development defines T cell repertoire formation
Park, J.-E., Botting, R. A., Dominguez Conde, C., Popescu, D.-M., Lavaert, M., Kunz, D. J., Stephenson, E., Ragazzini, R., Tuck, E., Wilbrey-Clark, A. L., Ferdinand, J. R., Webb, S., Maunder, D., Vandamme, N., Mahbubani, K. T., Polanski, K., Mamanova, L., Fuller, A., Filby, A., Reynolds, G., Dixon, D., Saeb-Parsy, K., Lisgo, S., Henderson, D., Vento-Tormo, R., Meyer, K. B., Saeys, Y., Bonfanti, P., Behjati, S., Clatworthy, M. R., Taghon, T., Haniffa, M., Teichmann, S. A.
10.1101/2020.01.28.911115 — Posted: 2020-01-28

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