bioRxiv Channel: The Sainsbury Laboratory https://biorxiv.org This feed contains articles for bioRxiv Channel "The Sainsbury Laboratory" bioRxiv bioRxiv https://biorxiv.org <![CDATA[ nQuire: A Statistical Framework For Ploidy Estimation Using Next Generation Sequencing ]]> https://biorxiv.org/cgi/content/short/143537v1?rss=1" Weiss, C. L. Pais, M. Cano, L. M. Kamoun, S. Burbano, H. A. 2017-05-29 doi:10.1101/143537 Cold Spring Harbor Laboratory Press 2017-05-29 <![CDATA[ Pattern-Triggered Immunity And Cell Wall Integrity Maintenance Jointly Modulate Plant Stress Responses ]]> https://biorxiv.org/cgi/content/short/130013v1?rss=1" Engelsdorf, T. Gigli-Bisceglia, N. Veerabagu, M. McKenna, J. F. Augstein, F. van der Does, D. Zipfel, C. Hamann, T. 2017-04-26 doi:10.1101/130013 Cold Spring Harbor Laboratory Press 2017-04-26 <![CDATA[ The ash dieback invasion of Europe was founded by two individuals from a native population with huge adaptive potential ]]> https://biorxiv.org/cgi/content/short/146746v1?rss=1" McMullan, M. Rafiqi, M. Kaithakottil, G. Clavijo, B. J. Bilham, L. Orton, E. Percival-Alwyn, L. Ward, B. J. Edwards, A. Saunders, D. G. O. Garcia, G. Wright, J. Verweij, W. Koutsovoulos, G. Yoshida, K. Hosoya, T. Williamson, L. Jennings, P. Ioos, R. Husson, C. Hietala, A. M. Vivian-Smith, A. Solheim, H. MacLean, D. Fosker, C. Hall, N. Brown, J. K. M. Swarbreck, D. Blaxter, M. Downie, A. Clark, M. D. 2017-06-06 doi:10.1101/146746 Cold Spring Harbor Laboratory Press 2017-06-06 <![CDATA[ Defining the genetic architecture of stripe rust resistance in the barley accession HOR1428 ]]> https://biorxiv.org/cgi/content/short/093773v1?rss=1" Clare, S. Kitcher, W. Gardiner, M. Green, P. Hubbard, A. Moscou, M. J. 2016-12-13 doi:10.1101/093773 Cold Spring Harbor Laboratory Press 2016-12-13 <![CDATA[ An Oomycete Effector Protein Induces Shade Avoidance In Arabidopsis And Attenuates Salicylate Signaling By Binding To Host Proteins Of The RADICAL-INDUCED CELL DEATH1 Family ]]> https://biorxiv.org/cgi/content/short/137844v1?rss=1" Wirthmueller, L. Asai, S. Rallapalli, G. Sklenar, J. Fabro, G. Kim, D. S. Lintermann, R. Jaspers, P. Wrzaczek, M. Kangasjarvi, J. MacLean, D. Menke, F. L. H. Banfield, M. J. Jones, J. D. G. 2017-05-14 doi:10.1101/137844 Cold Spring Harbor Laboratory Press 2017-05-14 <![CDATA[ NLR signaling network mediates immunity to diverse plant pathogens ]]> https://biorxiv.org/cgi/content/short/090449v1?rss=1" Wu, C.-H. Abd-El-Haliem, A. Bozkurt, T. O. Belhaj, K. Terauchi, R. Vossen, J. H. Kamoun, S. 2016-11-29 doi:10.1101/090449 Cold Spring Harbor Laboratory Press 2016-11-29 <![CDATA[ Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae ]]> https://biorxiv.org/cgi/content/short/059832v1?rss=1" Tofazzal Islam Daniel Croll Pierre Gladieux Darren Soanes Antoine Persoons Pallab Bhattacharjee Shaid Hossain Dipali Gupta Md. Mahbubur Rahman M Golam Mahboob Nicola Cook Moin Salam Vanessa Bueno Sancho Joao Nunes Maciel Antonio Nani Vanina Castroagudin Juliana Teodora de Assis Reges Paulo Ceresini Sebastien Ravel Ronny Kellner Elisabeth Fournier Didier Tharreau marc-henri Lebrun Bruce McDonald Tim Stitt Daniel Swan Nicholas Talbot Diane Saunders Joe Win Sophien Kamoun 2016-06-19 doi:10.1101/059832 Cold Spring Harbor Laboratory Press 2016-06-19 <![CDATA[ The potato NLR immune receptor R3a does not contain non-canonical integrated domains ]]> https://biorxiv.org/cgi/content/short/056242v1?rss=1" Artemis Giannakopoulou Angela Chaparro-Garcia Sophien Kamoun 2016-05-31 doi:10.1101/056242 Cold Spring Harbor Laboratory Press 2016-05-31 <![CDATA[ Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen ]]> https://biorxiv.org/cgi/content/short/116012v1?rss=1" Pais, M. Yoshida, K. Giannakopoulou, A. Pel, M. A. Cano, L. M. Oliva, R. F. Witek, K. Lindqvist-Kreuze, H. Vleeshouwers, V. G. A. A. Kamoun, S. 2017-03-11 doi:10.1101/116012 Cold Spring Harbor Laboratory Press 2017-03-11 <![CDATA[ Editing of the urease gene by CRISPR-Cas in the diatom Thalassiosira pseudonana ]]> https://biorxiv.org/cgi/content/short/062026v1?rss=1" Amanda Hopes Vladimir Nekrasov Sophien Kamoun Thomas Mock 2016-07-18 doi:10.1101/062026 Cold Spring Harbor Laboratory Press 2016-07-18 <![CDATA[ In planta expression screens of candidate effector proteins from the wheat yellow rust fungus reveal processing bodies as a pathogen-targeted plant cell compartment ]]> https://biorxiv.org/cgi/content/short/032276v1?rss=1" Benjamin Petre Diane GO Saunders Jan Sklenar Cecile Lorrain Ksenia V Krasileva Joe Win Sebastien Duplessis Sophien Kamoun 2015-11-19 doi:10.1101/032276 Cold Spring Harbor Laboratory Press 2015-11-19 <![CDATA[ Cell re-entry assays do not support models of pathogen- independent translocation of AvrM and AVR3a effectors into plant cells ]]> https://biorxiv.org/cgi/content/short/038232v1?rss=1" Benjamin Petre Michaela Kopischke Alexandre Evrard Silke Robatzek Sophien Kamoun 2016-01-29 doi:10.1101/038232 Cold Spring Harbor Laboratory Press 2016-01-29 <![CDATA[ LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell ]]> https://biorxiv.org/cgi/content/short/092726v1?rss=1" Sperschneider, J. Catanzariti, A.-M. DeBoer, K. Petre, B. Gardiner, D. Singh, K. Dodds, P. Taylor, J. 2016-12-09 doi:10.1101/092726 Cold Spring Harbor Laboratory Press 2016-12-09 <![CDATA[ Arabidopsis late blight: Infection of a nonhost plant by Albugo laibachii enables full colonization by Phytophthora infestans ]]> https://biorxiv.org/cgi/content/short/035006v1?rss=1" Khaoula Belhaj Liliana M. Cano David C. Prince Ariane Kemen Kentaro Yoshida Yasin F. Dagdas Graham J. Etherington Henk-jan Schoonbeek H. Peter van Esse Jonathan DG Jones Sophien Kamoun Sebastian Schornack 2015-12-23 doi:10.1101/035006 Cold Spring Harbor Laboratory Press 2015-12-23 <![CDATA[ Host autophagosomes are diverted to a plant-pathogen interface ]]> https://biorxiv.org/cgi/content/short/102996v1?rss=1" Dagdas, Y. Pandey, P. Sanguankiattichai, N. Tumtas, Y. Belhaj, K. Duggan, C. Segretin, M. Kamoun, S. Bozkurt, T. O. 2017-01-30 doi:10.1101/102996 Cold Spring Harbor Laboratory Press 2017-01-30 <![CDATA[ Genomic Rearrangements Considered as Quantitative Traits ]]> https://biorxiv.org/cgi/content/short/087387v1?rss=1" Imprialou, M. Kahles, A. Steffen, J. B. Osborne, E. J. Gan, X. Lempe, J. Bhomra, A. Belfield, E. J. Visscher, A. Greenhalgh, R. Harberd, N. P. Goram, R. Hein, J. J. Robert-Seilaniantz, A. Jones, J. J. Stegle, O. Kover, P. X. Tsiantis, M. Nordborg, M. Ratsch, G. Clark, R. Mott, R. 2016-11-12 doi:10.1101/087387 Cold Spring Harbor Laboratory Press 2016-11-12 <![CDATA[ RUST FUNGAL EFFECTORS MIMIC HOST TRANSIT PEPTIDES TO TRANSLOCATE INTO CHLOROPLASTS ]]> https://biorxiv.org/cgi/content/short/019521v1?rss=1" Benjamin Petre Cécile Lorrain Diane Saunders Sébastien Duplessis Sophien Kamoun 2015-05-19 doi:10.1101/019521 Cold Spring Harbor Laboratory Press 2015-05-19 <![CDATA[ Tomato I2 immune receptor can be engineered to confer partial resistance to the oomycete Phytophthora infestans in addition to the fungus Fusarium oxysporum ]]> https://biorxiv.org/cgi/content/short/022079v1?rss=1" Artemis Giannakopoulou John F. C. Steele Maria Eugenia Segretin Tolga O. Bozkurt Ji Zhou Silke Robatzek Mark J. Banfield Marina Pais Sophien Kamoun 2015-07-07 doi:10.1101/022079 Cold Spring Harbor Laboratory Press 2015-07-07 <![CDATA[ Immune receptors with exogenous domain fusions form evolutionary hotspots in grass genomes ]]> https://biorxiv.org/cgi/content/short/100834v1?rss=1" Bailey, P. C. Dagdas, G. Baggs, E. Haerty, W. Krasileva, K. V. 2017-01-20 doi:10.1101/100834 Cold Spring Harbor Laboratory Press 2017-01-20 <![CDATA[ Using 2k + 2 bubble searches to find SNPs in k-mer graphs ]]> https://biorxiv.org/cgi/content/short/004507v1?rss=1" Reda Younsi Dan MacLean 2014-04-24 doi:10.1101/004507 Cold Spring Harbor Laboratory Press 2014-04-24 <![CDATA[ The two-speed genomes of filamentous pathogens: waltz with plants ]]> https://biorxiv.org/cgi/content/short/021774v1?rss=1" Suomeng Dong Sylvain Raffaele Sophien Kamoun 2015-07-01 doi:10.1101/021774 Cold Spring Harbor Laboratory Press 2015-07-01 <![CDATA[ The Cf-4 receptor-like protein associates with the BAK1 receptor-like kinase to initiate receptor endocytosis and plant immunity ]]> https://biorxiv.org/cgi/content/short/019471v1?rss=1" Jelle Postma Thomas W. H. Liebrand Guozhi Bi Alexandre Evrard Ruby R. Bye Malick Mbengue Matthieu H. A. J. Joosten Silke Robatzek 2015-05-19 doi:10.1101/019471 Cold Spring Harbor Laboratory Press 2015-05-19 <![CDATA[ The NLR helper protein NRC3 but not NRC1 is required for Pto-mediated cell death in Nicotiana benthamiana ]]> https://biorxiv.org/cgi/content/short/015479v1?rss=1" Chih-Hang Wu Khaoula Belhaj Tolga O. Bozkurt Sophien Kamoun 2015-02-19 doi:10.1101/015479 Cold Spring Harbor Laboratory Press 2015-02-19 <![CDATA[ Sequencing of 15,622 gene-bearing BACs reveals new features of the barley genome ]]> https://biorxiv.org/cgi/content/short/018978v1?rss=1" María Muñoz-Amatriaín Stefano Lonardi MingCheng Luo Kavitha Madishetty Jan Svensson Matthew Moscou Steve Wanamaker Tao Jiang Andris Kleinhofs Gary Muehlbauer Roger Wise Nils Stein Yaqin Ma Edmundo Rodriguez Dave Kudrna Prasanna R Bhat Shiaoman Chao Pascal Condamine Shane Heinen Josh Resnik Rod Wing Heather N Witt Matthew Alpert Marco Beccuti Serdar Bozdag Francesca Cordero Hamid Mirebrahim Rachid Ounit Yonghui Wu Frank You Jie Zheng Hana Šimková Jaroslav Doležel Jane Grimwood Jeremy Schmutz Denisa Duma Lothar Altschmied Tom Blake Phil Bregitzer Laurel Cooper Muharrem Dilbirligi Anders Falk Lei 2015-05-05 doi:10.1101/018978 Cold Spring Harbor Laboratory Press 2015-05-05 <![CDATA[ IDENTIFICATION OF GENOMIC REGIONS CARRYING A CAUSAL MUTATION IN UNORDERED GENOMES ]]> https://biorxiv.org/cgi/content/short/026856v1?rss=1" Pilar Corredor-Moreno Ed Chalstrey Carlos A Lugo Dan MacLean 2015-09-15 doi:10.1101/026856 Cold Spring Harbor Laboratory Press 2015-09-15 <![CDATA[ Crowdsourced analysis of ash and ash dieback through the Open Ash Dieback project: A year 1 report on datasets and analyses contributed by a self-organising community. ]]> https://biorxiv.org/cgi/content/short/004564v1?rss=1" Diane Saunders Kentaro Yoshida Christine Sambles Rachel Glover Bernardo Clavijo Manuel Corpas Daniel Bunting Suomeng Dong Ghanasyam Rallapalli Matthew Clark David Swarbreck Sarah Ayling Matthew Bashton Steve Collin Tsuyoshi Hosoya Anne Edwards Lisa Crossman Graham Etherington Joe Win Liliana Cano David Studholme J Allan Downie Mario Caccamo Sophien Kamoun Dan MacLean 2014-04-25 doi:10.1101/004564 Cold Spring Harbor Laboratory Press 2014-04-25 <![CDATA[ Phytophthora infestans RXLR-WY effector AVR3a associates with a Dynamin-Related Protein involved in endocytosis of a plant pattern recognition receptor ]]> https://biorxiv.org/cgi/content/short/012963v1?rss=1" Angela Chaparro-Garcia Simon Schwizer Jan Sklenar Kentaro Yoshida Jorunn I. B. Bos Sebastian Schornack Alexandra M. E. Jones Tolga O. Bozkurt Sophien Kamoun 2014-12-19 doi:10.1101/012963 Cold Spring Harbor Laboratory Press 2014-12-19 <![CDATA[ Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses ]]> https://biorxiv.org/cgi/content/short/006155v1?rss=1" Benjamin Schwessinger Ofir Bahar Thomas Nicolas Nicolas Holton Vladimir Nekrasov Randy Ruan Patrick Canlas Arsalan Daudi Christopher Petzold Vasanth Singan Rita Kuo Mansi Chovatia Chris Daum Joshua Heazlewood Cyril Zipfel Pamela Ronald 2014-06-11 doi:10.1101/006155 Cold Spring Harbor Laboratory Press 2014-06-11 <![CDATA[ A Novel Approach for Multi-Domain and Multi-Gene Family Identification Provides Insights into Evolutionary Dynamics of Disease Resistance Genes in Core Eudicot Plants ]]> https://biorxiv.org/cgi/content/short/002766v1?rss=1" Johannes A. Hofberger Beifei Zhou Haibao Tang Jonathan DG Jones M. Eric Schranz 2014-02-17 doi:10.1101/002766 Cold Spring Harbor Laboratory Press 2014-02-17 <![CDATA[ Lessons in effector and NLR biology of plant-microbe systems ]]> https://biorxiv.org/cgi/content/short/171223v1?rss=1" Bialas, A. Zess, E. K. De la Concepcion, J. C. Franceschetti, M. Pennington, H. G. Yoshida, K. Upson, J. L. Chanclud, E. Wu, C.-H. Langner, T. Maqbool, A. Varden, F. A. Derevnina, L. Belhaj, K. Fujisaki, K. Saitoh, H. Terauchi, R. Banfield, M. J. Kamoun, S. 2017-08-02 doi:10.1101/171223 Cold Spring Harbor Laboratory Press 2017-08-02 <![CDATA[ Heterologous expression of the immune receptor EFR in Medicago truncatula reduces pathogenic infection, but not rhizobial symbiosis ]]> https://biorxiv.org/cgi/content/short/171868v1?rss=1" Pfeilmeier, S. George, J. Morel, A. Roy, S. Smoker, M. Stansfeld, L. Downie, A. Peeters, N. Malone, J. Zipfel, C. 2017-08-02 doi:10.1101/171868 Cold Spring Harbor Laboratory Press 2017-08-02 <![CDATA[ The plant calcium-dependent protein kinase CPK3 phosphorylates REM1.3 to restrict viral infection ]]> https://biorxiv.org/cgi/content/short/205765v1?rss=1" Perraki, A. Gronnier, J. Gouguet, P. Boudsocq, M. Deroubaix, A.-F. Simon, V. German-Retana, S. Zipfel, C. Bayer, E. Mongrand, S. Germain, V. 2017-10-19 doi:10.1101/205765 Cold Spring Harbor Laboratory Press 2017-10-19 <![CDATA[ Phytophthora methylomes modulated by expanded 6mA methyltransferases are associated with adaptive genome regions ]]> https://biorxiv.org/cgi/content/short/217646v1?rss=1" Chen, H. Shu, H. Wang, L. Zhang, F. Li, X. Ochola, S. Mao, F. Ma, H. Ye, W. Gu, T. Jiang, L. Wu, Y. Wang, Y. Kamoun, S. Dong, S. 2017-11-11 doi:10.1101/217646 Cold Spring Harbor Laboratory Press 2017-11-11 <![CDATA[ An unconventional NOI/RIN4 domain of a rice NLR protein binds host EXO70 protein to confer fungal immunity ]]> https://biorxiv.org/cgi/content/short/239400v1?rss=1" Fujisaki, K. Abe, Y. Kanzaki, E. Ito, K. Utsushi, H. Saitoh, H. Białas, A. Banfield, M. Kamoun, S. Terauchi, R. 2017-12-24 doi:10.1101/239400 Cold Spring Harbor Laboratory Press 2017-12-24 <![CDATA[ An ancient integration in a plant NLR is maintained as a trans-species polymorphism ]]> https://biorxiv.org/cgi/content/short/239541v1?rss=1" Brabham, H. J. Hernandez-Pinzon, I. Holden, S. Lorang, J. Moscou, M. J. 2017-12-25 doi:10.1101/239541 Cold Spring Harbor Laboratory Press 2017-12-25 <![CDATA[ Resistance gene discovery and cloning by sequence capture and association genetics ]]> https://biorxiv.org/cgi/content/short/248146v1?rss=1" Arora, S. Steuernagel, B. Chandramohan, S. Long, Y. Matny, O. Johnson, R. Enk, J. Periyannan, S. Hatta, M. A. M. Athiyannan, N. Cheema, J. Yu, G. Kangara, N. Ghosh, S. Szabo, L. J. Poland, J. Bariana, H. Jones, J. D. G. Bentley, A. R. Ayliffe, M. Olson, E. Xu, S. S. Steffenson, B. J. Lagudah, E. Wulff, B. B. H. 2018-01-15 doi:10.1101/248146 Cold Spring Harbor Laboratory Press 2018-01-15 <![CDATA[ The coming of age of EvoMPMI: evolutionary molecular plant-microbe interactions across multiple timescales ]]> https://biorxiv.org/cgi/content/short/254755v1?rss=1" Upson, J. L. Zess, E. K. Bialas, A. Wu, C.-H. Kamoun, S. 2018-01-28 doi:10.1101/254755 Cold Spring Harbor Laboratory Press 2018-01-28 <![CDATA[ TTL proteins scaffold brassinosteroid signaling components at the plasma membrane to optimize signal transduction in plant cells ]]> https://biorxiv.org/cgi/content/short/351056v1?rss=1" Amorim-Silva, V. Garcia-Moreno, A. Castillo, A. G. Lakhssassi, N. Perez-Sancho, J. Li, Y. Esteban del Valle, A. Pose, D. Perez-Rodriguez, J. Lin, J. Valpuesta, V. Borsani, O. Zipfel, C. Macho, A. P. Botella, M. A. 2018-06-20 doi:10.1101/351056 Cold Spring Harbor Laboratory Press 2018-06-20 <![CDATA[ The MoT3 assay does not distinguish between Magnaporthe oryzae wheat and rice blast isolates from Bangladesh ]]> https://biorxiv.org/cgi/content/short/345215v1?rss=1" Gupta, D. R. Reyes Avila, C. S. Win, J. Soanes, D. M. Ryder, L. S. Croll, D. Bhattacharjee, P. Hossain, M. S. Mahmud, N. U. Mehbub, M. S. Surovy, M. Z. Talbot, N. J. Kamoun, S. Islam, M. T. 2018-06-14 doi:10.1101/345215 Cold Spring Harbor Laboratory Press 2018-06-14 <![CDATA[ Physical and transcriptional organisation of the bread wheat intracellular immune receptor repertoire ]]> https://biorxiv.org/cgi/content/short/339424v1?rss=1" Steuernagel, B. Witek, K. Krattinger, S. G. Ramirez-Gonzalez, R. H. Schoonbeek, H.-j. Yu, G. Baggs, E. Witek, A. Yadav, I. Krasileva, K. V. Jones, J. D. G. Uauy, C. Keller, B. Ridout, C. J. The International Wheat Genome Sequencing Consortium, Wulff, B. 2018-06-05 doi:10.1101/339424 Cold Spring Harbor Laboratory Press 2018-06-05 <![CDATA[ A fungal ribonuclease-like effector protein inhibits plant host ribosomal RNA degradation ]]> https://biorxiv.org/cgi/content/short/291427v1?rss=1" Spanu, P. D. Pennington, H. G. Jones, R. Kwon, S. Bonciani, G. Thieron, H. Chandler, T. Luong, P. Morgan, S. Przydacz, M. Bozkurt, T. O. Bowden, S. Craze, M. Wallington, E. Garnett, J. Kwaitaal, M. Panstruga, R. Cota, E. 2018-03-29 doi:10.1101/291427 Cold Spring Harbor Laboratory Press 2018-03-29 <![CDATA[ Detection of race-specific resistance against Puccinia coronata f. sp. avenae in Brachypodium species ]]> https://biorxiv.org/cgi/content/short/281568v1?rss=1" Omidvar, V. Dugyala, S. Li, F. Rottschaefer, S. Miller, M. Ayliffe, M. Moscou, M. Kianian, S. Figueroa, M. 2018-03-13 doi:10.1101/281568 Cold Spring Harbor Laboratory Press 2018-03-13 <![CDATA[ DeepStomata: Facial Recognition Technology for Automated Stomatal Aperture Measurement ]]> https://biorxiv.org/cgi/content/short/365098v1?rss=1" Toda, Y. Toh, S. Bourdais, G. Robatzek, S. Maclean, D. Kinoshita, T. 2018-07-09 doi:10.1101/365098 Cold Spring Harbor Laboratory Press 2018-07-09 <![CDATA[ Optimization of T-DNA architecture for Cas9-mediated mutagenesis in Arabidopsis ]]> https://biorxiv.org/cgi/content/short/419952v1?rss=1" Castel, B. Tomlinson, L. Locci, F. Yang, Y. Jones, J. D. G. 2018-09-17 doi:10.1101/419952 Cold Spring Harbor Laboratory Press 2018-09-17 <![CDATA[ N-terminal β-strand underpins biochemical specialization of an ATG8 isoform ]]> https://biorxiv.org/cgi/content/short/453563v1?rss=1" Zess, E. K. Jensen, C. Cruz-Mireles, N. De la Concepcion, J. C. Sklenar, J. Imre, R. Roitinger, E. Hughes, R. Belhaj, K. Mechtler, K. Menke, F. Bozkurt, T. Banfield, M. Kamoun, S. Maqbool, A. Dagdas, Y. 2018-10-25 doi:10.1101/453563 Cold Spring Harbor Laboratory Press 2018-10-25 <![CDATA[ CrRLK1L receptor-like kinases HERK1 and ANJEA are female determinants of pollen tube reception ]]> https://biorxiv.org/cgi/content/short/428854v1?rss=1" Galindo-Trigo, S. Blanco-Tourinan, N. DeFalco, T. A. Zipfel, C. Gray, J. E. Smith, L. M. 2018-09-27 doi:10.1101/428854 Cold Spring Harbor Laboratory Press 2018-09-27 <![CDATA[ Cross-reactivity of a rice NLR immune receptor to distinct effectors from the blast pathogen leads to partial disease resistance ]]> https://biorxiv.org/cgi/content/short/530675v1?rss=1" Varden, F. A. Saitoh, H. YOSHINO, K. Franceschetti, M. Kamoun, S. Terauchi, R. Banfield, M. J. 2019-01-25 doi:10.1101/530675 Cold Spring Harbor Laboratory Press 2019-01-25 <![CDATA[ The Arabidopsis thaliana pan-NLRome ]]> https://biorxiv.org/cgi/content/short/537001v1?rss=1" Van de Weyer, A.-L. Monteiro, F. Furzer, O. J. Nishimura, M. T. Cevik, V. Witek, K. Jones, J. D. G. Dangl, J. L. Weigel, D. Bemm, F. 2019-01-31 doi:10.1101/537001 Cold Spring Harbor Laboratory Press 2019-01-31 <![CDATA[ Convergent gene loss in aquatic plants predicts new components of plant immunity and drought response ]]> https://biorxiv.org/cgi/content/short/572560v1?rss=1" Baggs, E. L. Thanki, A. S. O'Grady, R. Schudoma, C. Haerty, W. Krasileva, K. V. 2019-03-11 doi:10.1101/572560 Cold Spring Harbor Laboratory Press 2019-03-11 <![CDATA[ Tomato Prf requires NLR helpers NRC2 and NRC3 to confer resistance against the bacterial speck pathogen Pseudomonas syringae pv. tomato ]]> https://biorxiv.org/cgi/content/short/595744v1?rss=1" Wu, C.-H. Kamoun, S. 2019-04-01 doi:10.1101/595744 Cold Spring Harbor Laboratory Press 2019-04-01 <![CDATA[ Protein engineering expands the effector recognition profile of a rice NLR immune receptor ]]> https://biorxiv.org/cgi/content/short/611152v1?rss=1" De la Concepcion, J. C. Franceschetti, M. Terauchi, R. Kamoun, S. Banfield, M. J. 2019-04-16 doi:10.1101/611152 Cold Spring Harbor Laboratory Press 2019-04-16 <![CDATA[ Chitin perception in plasmodesmata identifies subcellular, context-specific immune signalling in plants ]]> https://biorxiv.org/cgi/content/short/611582v1?rss=1" Cheval, C. Johnston, M. Samwald, S. Liu, X. Bellandi, A. Breakspear, A. Kadota, Y. Zipfel, C. Faulkner, C. 2019-04-17 doi:10.1101/611582 Cold Spring Harbor Laboratory Press 2019-04-17 <![CDATA[ A convolutonal neural network for predicting transcriptional regulators of genes in Arabidopsis transcriptome data reveals classification based on positive regulatory interactions ]]> https://biorxiv.org/cgi/content/short/618926v1?rss=1" MacLean, D. 2019-04-26 doi:10.1101/618926 Cold Spring Harbor Laboratory Press 2019-04-26 <![CDATA[ Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing ]]> https://biorxiv.org/cgi/content/short/675678v1?rss=1" Read, A. C. Moscou, M. J. Zimin, A. V. Pertea, G. Meyer, R. S. Purugganan, M. D. Leach, J. E. Triplett, L. R. Salzberg, S. L. Bogdanove, A. J. 2019-06-20 doi:10.1101/675678 Cold Spring Harbor Laboratory Press 2019-06-20 <![CDATA[ A receptor for herbivore-associated molecular patterns mediates plant immunity ]]> https://biorxiv.org/cgi/content/short/679803v1?rss=1" Steinbrenner, A. D. Munoz-Amatriain, M. Venegas, J. M. A. Lo, S. Shi, D. Holton, N. Zipfel, C. Abagyan, R. Huffaker, A. Close, T. J. Schmelz, E. A. 2019-06-22 doi:10.1101/679803 Cold Spring Harbor Laboratory Press 2019-06-22 <![CDATA[ An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species ]]> https://biorxiv.org/cgi/content/short/693291v1?rss=1" Adachi, H. Contreras, M. Harant, A. Wu, C.-H. Derevnina, L. Sakai, T. Duggan, C. Moratto, E. Bozkurt, T. Maqbool, A. Win, J. Kamoun, S. 2019-07-04 doi:10.1101/693291 Cold Spring Harbor Laboratory Press 2019-07-04 <![CDATA[ Estradiol-inducible AvrRps4 expression reveals distinct properties of TIR-NLR-mediated effector-triggered immunity ]]> https://biorxiv.org/cgi/content/short/701359v1?rss=1" Ngou, B. P. M. Ahn, H.-K. Ding, P. Redkar, A. Brown, H. Ma, Y. Youles, M. Tomlinson, L. Jones, J. D. 2019-07-14 doi:10.1101/701359 Cold Spring Harbor Laboratory Press 2019-07-14 <![CDATA[ A CRISPR/Cas9 mediated 53 kb deletion of the NRC4 gene cluster of tomato does not affect bacterial flagellin-triggered immunity ]]> https://biorxiv.org/cgi/content/short/697425v1?rss=1" Wu, C.-H. Adachi, H. De la Concepcion, J. C. Castells-Graells, R. Nekrasov, V. Kamoun, S. 2019-07-10 doi:10.1101/697425 Cold Spring Harbor Laboratory Press 2019-07-10 <![CDATA[ High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation ]]> https://biorxiv.org/cgi/content/short/775973v1?rss=1" Ding, P. Ngou, B. P. M. Furzer, O. J. Sakai, T. Shrestha, R. K. MacLean, D. Jones, J. D. 2019-09-23 doi:10.1101/775973 Cold Spring Harbor Laboratory Press 2019-09-23 <![CDATA[ Intra-strain elicitation and suppression of plant immunity by Ralstonia solanacearum type-III effectors in Nicotiana benthamiana ]]> https://biorxiv.org/cgi/content/short/780890v1?rss=1" Sang, Y. Yu, W. Zhuang, H. Wei, Y. Derevnina, L. Luo, J. Macho, A. 2019-09-24 doi:10.1101/780890 Cold Spring Harbor Laboratory Press 2019-09-24 <![CDATA[ An rpw8 quadruple mutant of Arabidopsis Col-0 is partially compromised in bacterial and fungal resistance ]]> https://biorxiv.org/cgi/content/short/839308v1?rss=1" Castel, B. Wu, Y. Xiao, S. Jones, J. D. 2019-11-12 doi:10.1101/839308 Cold Spring Harbor Laboratory Press 2019-11-12 <![CDATA[ Cleavage of a pathogen apoplastic protein by plant subtilases activates immunity ]]> https://biorxiv.org/cgi/content/short/2019.12.16.878272v1?rss=1" Wang, S. Xing, R. Wang, Y. Shu, H. Fu, S. Paulus, J. Schuster, M. Saunders, D. Win, J. Vleeshouwers, V. Zheng, X. van der Hoorn, R. A. L. Kamoun, S. Dong, S. 2019-12-17 doi:10.1101/2019.12.16.878272 Cold Spring Harbor Laboratory Press 2019-12-17 <![CDATA[ Genomic rearrangements generate hypervariable mini-chromosomes in host-specific lineages of the blast fungus ]]> https://biorxiv.org/cgi/content/short/2020.01.10.901983v1?rss=1" Langner, T. Harant, A. Gomez-Luciano, L. B. Shrestha, R. K. Win, J. Kamoun, S. 2020-01-11 doi:10.1101/2020.01.10.901983 Cold Spring Harbor Laboratory Press 2020-01-11 <![CDATA[ Recently expanded clonal lineages of the rice blast fungus display distinct patterns of presence/absence of effector genes ]]> https://biorxiv.org/cgi/content/short/2020.01.09.900308v1?rss=1" Latorre, S. M. Reyes-Avila, C. S. Malmgren, A. Win, J. Kamoun, S. Burbano, H. 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Tümtas, Y. Savage, Z. Dagvadorj, B. Tan, E. Khandare, V. Duggan, C. Yusunov, T. Madalinski, M. Gabriel Mirkin, F. Schornack, S. Dagdas, Y. Kamoun, S. Bozkurt, T. O. 2020-03-21 doi:10.1101/2020.03.20.000117 Cold Spring Harbor Laboratory Press 2020-03-21 <![CDATA[ Mutual Potentiation of Plant Immunity by Cell-surface and Intracellular Receptors ]]> https://biorxiv.org/cgi/content/short/2020.04.10.034173v1?rss=1" Ngou, B. P. M. Ahn, H.-K. Ding, P. Jones, J. D. 2020-04-10 doi:10.1101/2020.04.10.034173 Cold Spring Harbor Laboratory Press 2020-04-10 <![CDATA[ Conserved Molecular Function and Regulatory Subfunctionalization of the LORELEI Gene Family in Brassicaceae ]]> https://biorxiv.org/cgi/content/short/2020.04.27.062893v1?rss=1" Noble, J. A. Liu, M.-C. J. DeFalco, T. A. Stegmann, M. McNamara, K. Sullivan, B. Dinh, K. K. Khuu, N. Hancock, S. Shiu, S.-H. Zipfel, C. Beilstein, M. A. Cheung, A. Y. Palanivelu, R. 2020-04-29 doi:10.1101/2020.04.27.062893 Cold Spring Harbor Laboratory Press 2020-04-29 <![CDATA[ Lumi-Map, a real-time luciferase bioluminescence screen of mutants combined with MutMap, reveals Arabidopsis genes involved in PAMP-triggered immunity ]]> https://biorxiv.org/cgi/content/short/2020.05.11.086728v1?rss=1" Kato, H. Onai, K. Abe, A. Shimizu, M. Takagi, H. Tateda, C. Utsushi, H. Singkarabanit-Ogawa, S. Kitakura, S. Ono, E. Zipfel, C. Takano, Y. Ishiura, M. Terauchi, R. 2020-05-12 doi:10.1101/2020.05.11.086728 Cold Spring Harbor Laboratory Press 2020-05-12 <![CDATA[ Identification of Avramr1 from Phytophthora infestans using long read and cDNA pathogen-enrichment sequencing (PenSeq) ]]> https://biorxiv.org/cgi/content/short/2020.05.14.095158v1?rss=1" Lin, X. Song, T. Fairhead, S. Witek, K. Jouet, A. Jupe, F. Witek, A. I. Vleeshouwers, V. G. A. A. Hein, I. Jones, J. D. G. 2020-05-14 doi:10.1101/2020.05.14.095158 Cold Spring Harbor Laboratory Press 2020-05-14 <![CDATA[ A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector ]]> https://biorxiv.org/cgi/content/short/2020.05.15.095497v1?rss=1" Witek, K. Lin, X. Karki, H. S. Jupe, F. Witek, A. I. Steuernagel, B. Stam, R. Van Oosterhout, C. Fairhead, S. Cocker, J. M. Bhanvadia, S. Barrett, W. Song, T. Vleeshouwers, V. G. Tomlinson, L. Wulff, B. B. Jones, J. D. 2020-05-16 doi:10.1101/2020.05.15.095497 Cold Spring Harbor Laboratory Press 2020-05-16 <![CDATA[ A vector system for fast-forward in vivo studies of the ZAR1 resistosome in the model plant Nicotiana benthamiana ]]> https://biorxiv.org/cgi/content/short/2020.05.15.097584v1?rss=1" Harant, A. Sakai, T. Kamoun, S. Adachi, H. 2020-05-16 doi:10.1101/2020.05.15.097584 Cold Spring Harbor Laboratory Press 2020-05-16 <![CDATA[ Chitosan inhibits septin-mediated plant infection by the rice blast fungus Magnaporthe oryzae in a Protein Kinase C and Nox1 NADPH oxidase-dependent manner ]]> https://biorxiv.org/cgi/content/short/2020.05.15.098657v1?rss=1" Lopez-Moya, F. Martin-Urdiroz, M. Oses-Ruiz, M. Fricker, M. D. Littlejohn, G. R. Lopez-Llorca, L. V. Talbot, N. J. 2020-05-16 doi:10.1101/2020.05.15.098657 Cold Spring Harbor Laboratory Press 2020-05-16 <![CDATA[ Cloning of the rice Xo1 resistance gene and interaction of the Xo1 protein with the defense-suppressing Xanthomonas effector Tal2h ]]> https://biorxiv.org/cgi/content/short/2020.05.26.116731v1?rss=1" Read, A. C. Hutin, M. C. Moscou, M. J. Rinaldi, F. C. Bogdanove, A. J. 2020-05-29 doi:10.1101/2020.05.26.116731 Cold Spring Harbor Laboratory Press 2020-05-29 <![CDATA[ Chromatin accessibility landscapes activated by cell surface and intracellular immune receptors ]]> https://biorxiv.org/cgi/content/short/2020.06.17.157040v1?rss=1" Ding, P. Sakai, T. Shrestha, R. K. Perez, N. M. Guo, W. Ngou, B. P. M. He, S. Liu, C. Feng, X. Zhang, R. Vandepoele, K. MacLean, D. Jones, J. D. 2020-06-18 doi:10.1101/2020.06.17.157040 Cold Spring Harbor Laboratory Press 2020-06-18 <![CDATA[ The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation ]]> https://biorxiv.org/cgi/content/short/2020.06.20.162834v1?rss=1" Zdrzalek, R. Kamoun, S. Terauchi, R. Saitoh, H. Banfield, M. J. 2020-06-20 doi:10.1101/2020.06.20.162834 Cold Spring Harbor Laboratory Press 2020-06-20 <![CDATA[ PacC-dependent adaptation and modulation of host cellular pH controls hemibiotrophic invasive growth and disease development by the rice blast fungus ]]> https://biorxiv.org/cgi/content/short/2020.06.22.164590v1?rss=1" Chen, X.-L. He, D. Yin, C. Yang, J. Sun, J. Wang, D. Xue, M. Li, Z. Peng, Z. Chen, D. Zhao, W. Xu, J.-R. Talbot, N. J. Peng, Y.-L. 2020-06-22 doi:10.1101/2020.06.22.164590 Cold Spring Harbor Laboratory Press 2020-06-22 <![CDATA[ Family-wide evaluation of RALF peptides in Arabidopsis thaliana ]]> https://biorxiv.org/cgi/content/short/2020.06.26.174169v1?rss=1" Abarca, A. Franck, C. M. Zipfel, C. 2020-06-27 doi:10.1101/2020.06.26.174169 Cold Spring Harbor Laboratory Press 2020-06-27 <![CDATA[ Accurate plant pathogen effector protein classification ab initio with deepredeff, an ensemble of convolutional neural networks ]]> https://biorxiv.org/cgi/content/short/2020.07.08.193250v1?rss=1" Ruth Kristianingsih Dan MacLean 2020-07-09 doi:10.1101/2020.07.08.193250 Cold Spring Harbor Laboratory Press 2020-07-09 <![CDATA[ RefPlantNLR: a comprehensive collection of experimentally validated plant NLRs ]]> https://biorxiv.org/cgi/content/short/2020.07.08.193961v1?rss=1" Jiorgos Kourelis Sophien Kamoun 2020-07-09 doi:10.1101/2020.07.08.193961 Cold Spring Harbor Laboratory Press 2020-07-09 <![CDATA[ FERONIA regulates FLS2 plasma membrane nanoscale dynamics to modulate plant immune signaling ]]> https://biorxiv.org/cgi/content/short/2020.07.20.212233v1?rss=1" zipfel, c. Gronnier, J. Franck, C. M. Stegmann, M. DeFalco, T. Abarca, A. Duenser, K. Lin, W. Yang, Z. Kleine-Vehn, J. Ringli, C. 2020-07-21 doi:10.1101/2020.07.20.212233 Cold Spring Harbor Laboratory Press 2020-07-21 <![CDATA[ Large-scale identification of ubiquitination sites on membrane-associated proteins in Arabidopsis thaliana seedlings ]]> https://biorxiv.org/cgi/content/short/2020.09.16.299883v1?rss=1" Grubb, L. Derbyshire, P. Dunning, K. Zipfel, C. Menke, F. L. H. Monaghan, J. 2020-09-17 doi:10.1101/2020.09.16.299883 Cold Spring Harbor Laboratory Press 2020-09-17 <![CDATA[ Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process ]]> https://biorxiv.org/cgi/content/short/2020.09.24.308585v1?rss=1" Petre, B. Contreras, M. P. Bozkurt, T. O. Schattat, M. H. Sklenar, J. Schornack, S. Abd-El-Haliem, A. Castells-Graells, R. Lozano-Duran, R. Dagdas, Y. Menke, F. Jones, A. M. E. Vossen, J. Robatzek, S. Kamoun, S. Win, J. 2020-09-24 doi:10.1101/2020.09.24.308585 Cold Spring Harbor Laboratory Press 2020-09-24 <![CDATA[ The Rpi-mcq1 resistance gene family recognizes Avr2 of Phytophthora infestans but is distinct from R2 ]]> https://biorxiv.org/cgi/content/short/2020.10.08.331181v1?rss=1" Aguilera-Galvez, C. Chu, Z. Sumaiya Haque, O. Wouters, D. Gilroy, E. Vossen, J. Visser, R. Birch, P. Jones, J. Vleeshouwers, V. G. A. A. 2020-10-08 doi:10.1101/2020.10.08.331181 Cold Spring Harbor Laboratory Press 2020-10-08 <![CDATA[ Jurassic NLR: conserved and dynamic evolutionary features of the atypically ancient immune receptor ZAR1 ]]> https://biorxiv.org/cgi/content/short/2020.10.12.333484v1?rss=1" Adachi, H. Sakai, T. Kourelis, J. Maqbool, A. Kamoun, S. 2020-10-12 doi:10.1101/2020.10.12.333484 Cold Spring Harbor Laboratory Press 2020-10-12 <![CDATA[ The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 homeostasis and is targeted by a bacterial type-III effector ]]> https://biorxiv.org/cgi/content/short/2020.10.25.354514v1?rss=1" Derkacheva, M. Yu, G. Rufian, J. S. Jiang, S. Derbyshire, P. Morcillo, R. Stransfeld, L. Wei, Y. Menke, F. Zipfel, C. Macho, A. 2020-10-26 doi:10.1101/2020.10.25.354514 Cold Spring Harbor Laboratory Press 2020-10-26 <![CDATA[ The host exocyst complex is targeted by a conserved bacterial type III effector protein that promotes virulence ]]> https://biorxiv.org/cgi/content/short/2020.11.06.371260v1?rss=1" A. Michalopoulou, V. A. Kotsaridis, K. Mermigka, G. Kotsifaki, D. Kokkinidis, M. Celie, P. H. N. Jones, J. D. G. Sarris, P. F. 2020-11-07 doi:10.1101/2020.11.06.371260 Cold Spring Harbor Laboratory Press 2020-11-07 <![CDATA[ The transcriptional landscape of Arabidopsis thaliana pattern-triggered immunity ]]> https://biorxiv.org/cgi/content/short/2020.11.30.404566v1?rss=1" Bjornson, M. Pimprikar, P. Nuernberger, T. Zipfel, C. 2020-12-01 doi:10.1101/2020.11.30.404566 Cold Spring Harbor Laboratory Press 2020-12-01 <![CDATA[ Multiple variants of the blast fungus effector AVR-Pik bind the HMA domain of the rice protein OsHIPP19 with high affinity. ]]> https://biorxiv.org/cgi/content/short/2020.12.01.403451v1?rss=1" Maidment, J. H. R. Franceschetti, M. Maqbool, A. Saitoh, H. Jantasuriyarat, C. Kamoun, S. Terauchi, R. Banfield, M. J. 2020-12-01 doi:10.1101/2020.12.01.403451 Cold Spring Harbor Laboratory Press 2020-12-01 <![CDATA[ The blast pathogen effector AVR-Pik binds and stabilizes rice heavy metal-associated (HMA) proteins to co-opt their function in immunity ]]> https://biorxiv.org/cgi/content/short/2020.12.01.406389v1?rss=1" Oikawa, K. Fujisaki, K. Shimizu, M. Takeda, T. Saitoh, H. Hirabuchi, A. Hiraka, Y. Białas, A. Langner, T. Kellner, R. Bozkurt, T. O. Cesari, S. Kroj, T. Maidment, J. Banfield, M. J. Kamoun, S. Terauchi, R. 2020-12-02 doi:10.1101/2020.12.01.406389 Cold Spring Harbor Laboratory Press 2020-12-02 <![CDATA[ Rhamnolipids and their 3-(3-hydroxyalkanoyloxy)alkanoic acid precursors activate Arabidopsis innate immunity through two independent mechanisms ]]> https://biorxiv.org/cgi/content/short/2020.12.18.423392v1?rss=1" Schellenberger, R. Crouzet, J. Nickzad, A. Kutschera, A. Gerster, T. Borie, N. Dawid, C. Cloutier, M. Villaume, S. Dhondt-Cordelier, S. Hubert, J. Cordelier, S. Mazeyrat-Gourbeyre, F. Schmid, C. Ongena, M. Renault, J.-H. Haudrechy, A. Hofmann, T. Baillieul, F. Clement, C. Zipfel, C. Gauthier, C. Deziel, E. Ranf, S. Dorey, S. 2020-12-20 doi:10.1101/2020.12.18.423392 Cold Spring Harbor Laboratory Press 2020-12-20 <![CDATA[ Pathogen effector recognition-dependent association of NRG1 with EDS1 and SAG101 in TNL receptor immunity ]]> https://biorxiv.org/cgi/content/short/2020.12.21.423810v1?rss=1" Sun, X. Lapin, D. Feehan, J. M. Stolze, S. C. Kramer, K. Dongus, J. A. Rzemieniewski, J. Blanvillain-Baufume, S. Harzen, A. Bautor, J. Derbyshire, P. Menke, F. L. H. Finkemeier, I. Nakagami, H. Jones, J. D. G. Parker, J. E. 2020-12-22 doi:10.1101/2020.12.21.423810 Cold Spring Harbor Laboratory Press 2020-12-22 <![CDATA[ The phagocytosis oxidase/Bem1p (PB1) domain-containing protein PB1CP negatively regulates the NADPH oxidase RBOHD in plant immunity ]]> https://biorxiv.org/cgi/content/short/2020.12.28.423414v1?rss=1" Goto, Y. Maki, N. Sklenar, J. Derbyshire, P. Menke, F. L. H. Zipfel, C. Kadota, Y. Shirasu, K. 2020-12-29 doi:10.1101/2020.12.28.423414 Cold Spring Harbor Laboratory Press 2020-12-29 <![CDATA[ Allelic variants of the NLR protein Rpi-chc1 differentially recognise members of the Phytophthora infestans PexRD12/31 effector superfamily through the leucine-rich repeat domain ]]> https://biorxiv.org/cgi/content/short/2020.12.29.424692v1?rss=1" Monino Lopez, D. Nijenhuis, M. Kodde, L. Kamoun, S. Salehian, H. Schenstnyi, K. Stam, R. Lokossou, A. Abd'el Haliem, A. Visser, R. Vossen, J. 2020-12-30 doi:10.1101/2020.12.29.424692 Cold Spring Harbor Laboratory Press 2020-12-30 <![CDATA[ A conserved regulatory module regulates receptor kinase signaling in immunity and development ]]> https://biorxiv.org/cgi/content/short/2021.01.19.427293v1?rss=1" DeFalco, T. A. Anne, P. James, S. R. Willoughby, A. Johanndrees, O. Genolet, Y. Pullen, A.-M. zipfel, c. Hardtke, C. Nimchuk, Z. L. 2021-01-20 doi:10.1101/2021.01.19.427293 Cold Spring Harbor Laboratory Press 2021-01-20 <![CDATA[ The Arabidopsis immune receptor EFR increases resistance to the bacterial pathogens Xanthomonas and Xylella in transgenic sweet orange ]]> https://biorxiv.org/cgi/content/short/2021.01.22.427732v1?rss=1" Mitre, L. K. Teixeira-Silva, N. S. Rybak, K. Magalhaes, D. M. de Souza-Neto, R. R. Robatzek, S. Zipfel, C. De Souza, A. A. 2021-01-22 doi:10.1101/2021.01.22.427732 Cold Spring Harbor Laboratory Press 2021-01-22 <![CDATA[ The Arabidopsis pattern recognition receptor EFR enhances fire blight resistance in apple ]]> https://biorxiv.org/cgi/content/short/2021.01.22.427734v1?rss=1" Piazza, S. Campa, M. Pompili, V. Costa, L. D. Salvagnin, U. Nekrasov, V. Zipfel, C. Malnoy, M. 2021-01-22 doi:10.1101/2021.01.22.427734 Cold Spring Harbor Laboratory Press 2021-01-22 <![CDATA[ Genome evolution of a non-parasitic secondary heterotroph, the diatom Nitzschia putrida ]]> https://biorxiv.org/cgi/content/short/2021.01.24.427197v1?rss=1" Kamikawa, R. Mochizuki, T. Sakamoto, M. Tanizawa, Y. Nakayama, T. Onuma, R. Cenci, U. Moog, D. Speak, S. Sarkozi, K. Toseland, A. van Oosterhout, C. Oyama, K. Kato, M. Kume, K. Kayama, M. Azuma, T. Ishii, K.-i. Miyashita, H. Henrissat, B. Lombard, V. Win, J. Kamoun, S. Kashiyama, Y. Mayama, S. Miyagishima, S.-y. Tanifuji, G. Mock, T. Nakamura, Y. 2021-01-24 doi:10.1101/2021.01.24.427197 Cold Spring Harbor Laboratory Press 2021-01-24 <![CDATA[ Two NLR immune receptors acquired high-affinity binding to a fungal effector through convergent evolution of their integrated domain ]]> https://biorxiv.org/cgi/content/short/2021.01.26.428286v1?rss=1" Bialas, A. Langner, T. Harant, A. Contreras, M. P. Stevenson, C. E. M. Lawson, D. M. Sklenar, J. Kellner, R. Moscou, M. J. Terauchi, R. Banfield, M. J. Kamoun, S. 2021-01-27 doi:10.1101/2021.01.26.428286 Cold Spring Harbor Laboratory Press 2021-01-27 <![CDATA[ A novel allele in the Arabidopsis thaliana MACPF protein CAD1 results in deregulated immune signaling ]]> https://biorxiv.org/cgi/content/short/2021.01.28.428637v1?rss=1" Holmes, D. R. Bredow, M. Thor, K. Pascetta, S. A. Sementchoukova, I. Siegel, K. R. Zipfel, C. Monaghan, J. 2021-01-28 doi:10.1101/2021.01.28.428637 Cold Spring Harbor Laboratory Press 2021-01-28 <![CDATA[ A hetero-oligomeric remorin-receptor complex regulates plant development ]]> https://biorxiv.org/cgi/content/short/2021.01.28.428596v1?rss=1" Abel, N. B. Buschle, C. A. Hernandez-Ryes, C. Burkart, S. S. Deroubaix, A.-F. Mergner, J. Gronnier, J. Jarsch, I. K. Folgmann, J. Braun, K. H. Bayer, E. Germain, V. Derbyshire, P. Menke, F. L. H. Kemmerling, B. Zipfel, C. Kuester, B. Mongrand, S. Marin, M. Ott, T. 2021-01-29 doi:10.1101/2021.01.28.428596 Cold Spring Harbor Laboratory Press 2021-01-29 <![CDATA[ Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network ]]> https://biorxiv.org/cgi/content/short/2021.02.03.429184v1?rss=1" Derevnina, L. Contreras, M. P. Adachi, H. Upson, J. Vergara Cruces, A. Xie, R. Sklenar, J. Menke, F. L. Mugford, S. T. MacLean, D. T. Ma, W. Hogenhout, S. A. Goverse, A. Maqbool, A. Wu, C.-h. Kamoun, S. 2021-02-03 doi:10.1101/2021.02.03.429184 Cold Spring Harbor Laboratory Press 2021-02-03 <![CDATA[ Biophysical and proteomic analyses suggest functions of Pseudomonas syringae pv tomato DC3000 extracellular vesicles in bacterial growth during plant infection ]]> https://biorxiv.org/cgi/content/short/2021.02.08.430144v1?rss=1" Janda, M. Ludwig, C. Rybak, K. Meng, C. Stigliano, E. Botzenhardt, L. Szulc, B. Sklenar, J. Menke, F. L. H. Malone, J. G. Brachmann, A. Klingl, A. Robatzek, S. 2021-02-08 doi:10.1101/2021.02.08.430144 Cold Spring Harbor Laboratory Press 2021-02-08 <![CDATA[ Parasite co-opts a ubiquitin receptor to induce a plethora of developmental changes ]]> https://biorxiv.org/cgi/content/short/2021.02.15.430920v1?rss=1" Huang, W. MacLean, A. Sugio, A. Maqbool, A. Busscher, M. Cho, S.-T. Kamoun, S. Kuo, C.-H. Immink, R. G. H. Hogenhout, S. A. 2021-02-15 doi:10.1101/2021.02.15.430920 Cold Spring Harbor Laboratory Press 2021-02-15 <![CDATA[ A single amino acid polymorphism in a conserved effector of the multihost blast fungus pathogen expands host-target binding spectrum ]]> https://biorxiv.org/cgi/content/short/2021.03.15.435478v1?rss=1" Bentham, A. R. Petit-Houdenot, Y. Win, J. Chuma, I. Terauchi, R. Banfield, M. J. Kamoun, S. Langner, T. 2021-03-16 doi:10.1101/2021.03.15.435478 Cold Spring Harbor Laboratory Press 2021-03-16 <![CDATA[ Dynamic accumulation of a helper NLR at the plant-pathogen interface underpins pathogen recognition ]]> https://biorxiv.org/cgi/content/short/2021.03.15.435521v1?rss=1" Duggan, C. Moratto, E. Savage, Z. Hamilton, E. Adachi, H. Wu, C.-H. Leary, A. Y. Tumtas, Y. Rothery, S. Maqbool, A. Kamoun, S. Bozkurt, T. O. 2021-03-16 doi:10.1101/2021.03.15.435521 Cold Spring Harbor Laboratory Press 2021-03-16 <![CDATA[ The Arabidopsis WRR4A and WRR4B paralogous NLR proteins both confer recognition of multiple Albugo candida effectors ]]> https://biorxiv.org/cgi/content/short/2021.03.29.436918v1?rss=1" Redkar, A. Cevik, V. Bailey, K. Furzer, O. J. Fairhead, S. Borhan, M. H. Holub, E. B. Jones, J. D. G. 2021-03-29 doi:10.1101/2021.03.29.436918 Cold Spring Harbor Laboratory Press 2021-03-29 <![CDATA[ An improved assembly of the Albugo candida Ac2V genome reveals the expansion of the "CCG" class of effectors ]]> https://biorxiv.org/cgi/content/short/2021.03.29.437041v1?rss=1" Furzer, O. J. Cevik, V. Fairhead, S. Bailey, K. Redkar, A. Schudoma, C. MacLean, D. Holub, E. B. Jones, J. D. G. 2021-03-29 doi:10.1101/2021.03.29.437041 Cold Spring Harbor Laboratory Press 2021-03-29 <![CDATA[ Evolutionary trade-offs at the Arabidopsis WRR4A resistance locus underpin alternate Albugo candida recognition specificities ]]> https://biorxiv.org/cgi/content/short/2021.03.29.437434v1?rss=1" View larger version (29K): org.highwire.dtl.DTLVardef@a68de6org.highwire.dtl.DTLVardef@ae0addorg.highwire.dtl.DTLVardef@4b3384org.highwire.dtl.DTLVardef@12330b2_HPS_FORMAT_FIGEXP M_FIG C_FIG ]]> Castel, B. Fairhead, S. Furzer, O. J. Redkar, A. Wang, S. Cevik, V. Holub, E. Jones, J. D. 2021-03-29 doi:10.1101/2021.03.29.437434 Cold Spring Harbor Laboratory Press 2021-03-29 <![CDATA[ The TCP transcription factor HvTB2 heterodimerizes with VRS5(HvTB1) and controls spike architecture in barley ]]> https://biorxiv.org/cgi/content/short/2021.04.14.439785v1?rss=1" de Souza Moraes, T. van Es, S. W. Hernandez-Pinzon, I. Kirschner, G. van der Wal, F. Rodrigues da Silveira, S. Busscher-Lange, J. Angenent, G. Moscou, M. Immink, R. van Esse, W. G. 2021-04-14 doi:10.1101/2021.04.14.439785 Cold Spring Harbor Laboratory Press 2021-04-14 <![CDATA[ ACTIVATION LOOP PHOSPHORYLATION OF A NON-RD RECEPTOR KINASE INITIATES PLANT INNATE IMMUNE SIGNALING ]]> https://biorxiv.org/cgi/content/short/2021.05.01.442257v1?rss=1" Bender, K. W. Couto, D. Kadota, Y. Macho, A. P. Sklenar, J. Bjornson, M. Petriello, A. Font Farre, M. Schwessinger, B. Ntoukakis, V. Stransfeld, L. Jones, A. M. E. Menke, F. L. zipfel, c. 2021-05-01 doi:10.1101/2021.05.01.442257 Cold Spring Harbor Laboratory Press 2021-05-01 <![CDATA[ The immune Rysto receptor recognizes a broadly conserved feature of potyviral coat proteins ]]> https://biorxiv.org/cgi/content/short/2021.05.20.444601v1?rss=1" Grech-Baran, M. Witek, K. Poznanski, J. Grupa-Urbanska, A. Malinowski, T. Lichocka, M. Jones, J. D. Hennig, J. 2021-05-21 doi:10.1101/2021.05.20.444601 Cold Spring Harbor Laboratory Press 2021-05-21 <![CDATA[ Rpi-amr3 confers resistance to multiple Phytophthora species by recognizing a conserved RXLR effector ]]> https://biorxiv.org/cgi/content/short/2021.06.10.447899v1?rss=1" Lin, X. Olave-Achury, A. Heal, R. Witek, K. Karki, H. S. Song, T. Wu, C.-h. Adachi, H. Kamoun, S. Vleeshouwers, V. G. A. A. Jones, J. D. 2021-06-10 doi:10.1101/2021.06.10.447899 Cold Spring Harbor Laboratory Press 2021-06-10 <![CDATA[ Pseudomonas syringae addresses distinct environmental challenges during plant infection through the coordinated deployment of polysaccharides ]]> https://biorxiv.org/cgi/content/short/2021.06.18.449010v1?rss=1" Pilla, S. K. Woodcock, S. D. Pfeilmeier, S. Borneman, S. Zipfel, C. Malone, J. G. 2021-06-18 doi:10.1101/2021.06.18.449010 Cold Spring Harbor Laboratory Press 2021-06-18 <![CDATA[ Functional diversification gave rise to allelic specialization in a rice NLR immune receptor pair ]]> https://biorxiv.org/cgi/content/short/2021.06.25.449940v1?rss=1" De la Concepcion, J. C. Benjumea, J. V. Bialas, A. Terauchi, R. Kamoun, S. Banfield, M. J. 2021-06-25 doi:10.1101/2021.06.25.449940 Cold Spring Harbor Laboratory Press 2021-06-25 <![CDATA[ Perception of structurally distinct effectors by the integrated WRKY domain of a plant immune receptor. ]]> https://biorxiv.org/cgi/content/short/2021.07.28.454147v1?rss=1" Mukhi, N. Brown, H. Gorenkin, D. Ding, P. Bentham, A. R. Jones, J. D. Banfield, M. J. 2021-07-28 doi:10.1101/2021.07.28.454147 Cold Spring Harbor Laboratory Press 2021-07-28 <![CDATA[ pOPIN-GG: A resource for modular assembly in protein expression vectors ]]> https://biorxiv.org/cgi/content/short/2021.08.10.455798v1?rss=1" Bentham, A. R. Youles, M. Mendel, M. N. Varden, F. A. De la Concepcion, J. C. Banfield, M. J. 2021-08-10 doi:10.1101/2021.08.10.455798 Cold Spring Harbor Laboratory Press 2021-08-10 <![CDATA[ Conserved secreted effectors determine endophytic growth and multi-host plant compatibility in a vascular wilt fungus ]]> https://biorxiv.org/cgi/content/short/2021.08.29.457830v1?rss=1" Redkar, A. Sabale, M. Schudoma, C. Zechmann, B. Gupta, Y. K. Lopez-Berges, M. S. Venturini, G. Gimenez Ibanez, S. Turra, D. Solano, R. Di Pietro, A. 2021-08-29 doi:10.1101/2021.08.29.457830 Cold Spring Harbor Laboratory Press 2021-08-29 <![CDATA[ A CCaMK/Cyclops response element in the promoter of L. japonicus Calcium-Binding Protein 1 (CBP1) mediates transcriptional activation in root symbioses ]]> https://biorxiv.org/cgi/content/short/2021.08.11.455944v1?rss=1" Gong, X. Bucerius, S. Jensen, E. Parniske, M. 2021-08-11 doi:10.1101/2021.08.11.455944 Cold Spring Harbor Laboratory Press 2021-08-11 <![CDATA[ S-acylation is a positive regulator of FLS2-mediated plant immunity ]]> https://biorxiv.org/cgi/content/short/2021.08.30.457756v1?rss=1" Hurst, C. H. Turnbull, D. Gronnier, J. Myles, S. Pflughaupt, R. L. Kopischke, M. Davies, P. Jones, S. Robatzek, S. Zipfel, C. Hemsley, P. 2021-08-31 doi:10.1101/2021.08.30.457756 Cold Spring Harbor Laboratory Press 2021-08-31 <![CDATA[ A genetically linked pair of NLR immune receptors show contrasting patterns of evolution ]]> https://biorxiv.org/cgi/content/short/2021.09.01.458560v1?rss=1" Shimizu, M. Hirabuchi, A. Sugihara, Y. Abe, A. Takeda, T. Kobayashi, M. Hiraka, Y. Kanzaki, E. Oikawa, K. Saitoh, H. Langner, T. Banfield, M. J. Kamoun, S. Terauchi, R. 2021-09-02 doi:10.1101/2021.09.01.458560 Cold Spring Harbor Laboratory Press 2021-09-02 <![CDATA[ The helper NLR immune protein NRC3 mediates the hypersensitive cell death caused by the cell-surface receptor Cf-4 ]]> https://biorxiv.org/cgi/content/short/2021.09.28.461843v1?rss=1" Kourelis, J. Contreras, M. P. Harant, A. Adachi, H. Derevnina, L. Wu, C.-H. Kamoun, S. 2021-09-28 doi:10.1101/2021.09.28.461843 Cold Spring Harbor Laboratory Press 2021-09-28 <![CDATA[ Novel effector recognition capacity engineered into a paired NLR complex ]]> https://biorxiv.org/cgi/content/short/2021.09.06.459143v1?rss=1" Wang, S. Huang, W. Duxbury, Z. Hogenhout, S. A. Jones, J. D. 2021-09-06 doi:10.1101/2021.09.06.459143 Cold Spring Harbor Laboratory Press 2021-09-06 <![CDATA[ A NET4-RabG3 couple mediate the link between actin and the tonoplast and is essential for normal actin cytoskeletal remodelling in stomatal closure to flg22 ]]> https://biorxiv.org/cgi/content/short/2021.09.29.461190v1?rss=1" HAWKINS, T. J. Kopischke, M. Mentlak, D. Duckney, P. Kroon, J. Bui, M. T. Richardson, C. Casey, M. Alexander, A. De Jaeger, G. Kalde, M. Moore, I. Dagdas, Y. Hussey, P. J. Robatzek, S. 2021-09-30 doi:10.1101/2021.09.29.461190 Cold Spring Harbor Laboratory Press 2021-09-30 <![CDATA[ Regressive evolution of an effector following a host jump in the Irish Potato Famine Pathogen Lineage ]]> https://biorxiv.org/cgi/content/short/2021.10.04.463104v1?rss=1" Zess, E. K. Dagdas, Y. F. Peers, E. Maqbool, A. Banfield, M. J. Bozkurt, T. O. Kamoun, S. 2021-10-05 doi:10.1101/2021.10.04.463104 Cold Spring Harbor Laboratory Press 2021-10-05 <![CDATA[ Chloroplast movement and positioning protein CHUP1 is required for focal immunity against Phytophthora infestans ]]> https://biorxiv.org/cgi/content/short/2021.10.08.463641v1?rss=1" Savage, Z. Erickson, J. L. Prautsch, J. Balmez, A. I. Tumtas, Y. Yuen, E. L. H. Stuttmann, J. Fantino, E. Duggan, C. Molinari, C. Schattat, M. Bozkurt, T. O. 2021-10-09 doi:10.1101/2021.10.08.463641 Cold Spring Harbor Laboratory Press 2021-10-09 <![CDATA[ NLR immune receptor-nanobody fusions confer plant disease resistance ]]> https://biorxiv.org/cgi/content/short/2021.10.24.465418v1?rss=1" Kourelis, J. Marchal, C. Kamoun, S. 2021-10-24 doi:10.1101/2021.10.24.465418 Cold Spring Harbor Laboratory Press 2021-10-24 <![CDATA[ Perception of a conserved family of plant signalling peptides by the receptor kinase HSL3 ]]> https://biorxiv.org/cgi/content/short/2021.10.25.465685v1?rss=1" Rhodes, J. Roman, A.-O. Bjornson, M. Brandt, B. Derbyshire, P. Wyler, M. Schmid, M. Menke, F. L. Santiago, J. Zipfel, C. 2021-10-26 doi:10.1101/2021.10.25.465685 Cold Spring Harbor Laboratory Press 2021-10-26 <![CDATA[ An atypical NLR protein modulates the NRC immune receptor network ]]> https://biorxiv.org/cgi/content/short/2021.11.15.468391v1?rss=1" Adachi, H. Sakai, T. Harant, A. Duggan, C. Bozkurt, T. Wu, C.-H. Kamoun, S. 2021-11-15 doi:10.1101/2021.11.15.468391 Cold Spring Harbor Laboratory Press 2021-11-15 <![CDATA[ A lineage-specific Exo70 is required for receptor kinase-mediated immunity in barley ]]> https://biorxiv.org/cgi/content/short/2021.12.19.473371v1?rss=1" Holden, S. Bergum, M. Green, P. Bettgenhaeuser, J. Hernandez-Pinzon, I. Thind, A. Clare, S. J. Russell, J. M. Hubbard, A. Taylor, J. Smoker, M. Gardiner, M. Civolani, L. Cosenza, F. Rosignoli, S. Strugala, R. Molnar, I. Simkova, H. Dolezel, J. Schaffrath, U. Barrett, M. Salvi, S. Moscou, M. J. 2021-12-21 doi:10.1101/2021.12.19.473371 Cold Spring Harbor Laboratory Press 2021-12-21 <![CDATA[ Clathrin-mediated Endocytosis Facilitates Internalization of Magnaporthe oryzae Effectors into Rice Cells ]]> https://biorxiv.org/cgi/content/short/2021.12.28.474284v1?rss=1" Oliveira-Garcia, E. Tamang, T. M. Park, J.-E. Dalby, M. Martin-Urdiroz, M. Rodriguez Herrero, C. Hong Vu, A. Park, S. Talbot, N. J. Valent, B. 2021-12-29 doi:10.1101/2021.12.28.474284 Cold Spring Harbor Laboratory Press 2021-12-29 <![CDATA[ In planta transcriptomics reveals conflicts between pattern-triggered immunity and the AlgU sigma factor regulon ]]> https://biorxiv.org/cgi/content/short/2022.01.03.474781v1?rss=1" Wang, H. Lovelace, A. Smith, A. Kvitko, B. H. 2022-01-03 doi:10.1101/2022.01.03.474781 Cold Spring Harbor Laboratory Press 2022-01-03 <![CDATA[ Concerted expansion and contraction of immune receptor gene repertoires in plant genomes ]]> https://biorxiv.org/cgi/content/short/2022.01.01.474684v1?rss=1" Ngou, B. P. M. Heal, R. Wyler, M. Schmid, M. W. Jones, J. D. 2022-01-02 doi:10.1101/2022.01.01.474684 Cold Spring Harbor Laboratory Press 2022-01-02 <![CDATA[ Arabidopsis CONSERVED BINDING OF EIF4E1 negatively regulates the NADPH oxidase RESPIRATORY BURST OXIDASE HOMOLOG D ]]> https://biorxiv.org/cgi/content/short/2022.01.27.478037v1?rss=1" George, J. Stegmann, M. Monaghan, J. Zipfel, C. 2022-01-28 doi:10.1101/2022.01.27.478037 Cold Spring Harbor Laboratory Press 2022-01-28 <![CDATA[ A wheat kinase and immune receptor form the host-specificity barrier against the blast fungus ]]> https://biorxiv.org/cgi/content/short/2022.01.27.477927v1?rss=1" Arora, S. Steed, A. Goddard, R. Gaurav, K. O'Hara, T. Schoen, A. Rawat, N. Elkot, A. F. Chinoy, C. Nicholson, M. H. Asuke, S. Steuernagel, B. Yu, G. Awal, R. Forner-Martinez, M. Wingen, L. Baggs, E. Clarke, J. Krasileva, K. V. Tosa, Y. Jones, J. D. G. Tiwari, V. K. Wulff, B. B. H. Nicholson, P. 2022-01-28 doi:10.1101/2022.01.27.477927 Cold Spring Harbor Laboratory Press 2022-01-28 <![CDATA[ SNP calling parameters have minimal impact on population structure and divergence time estimates for the rice blast fungus ]]> https://biorxiv.org/cgi/content/short/2022.03.06.482794v1?rss=1" Latorre, S. M. Langner, T. Malmgren, A. Win, J. Kamoun, S. Burbano, H. A. 2022-03-07 doi:10.1101/2022.03.06.482794 Cold Spring Harbor Laboratory Press 2022-03-07 <![CDATA[ Effector-dependent activation and oligomerization of NRC helper NLRs by Rpi-amr3 and Rpi-amr1 ]]> https://biorxiv.org/cgi/content/short/2022.04.25.489359v1?rss=1" Ahn, H.-K. Lin, X. Olave-Achury, A. C. Derevnina, L. Contreras, M. P. Kourelis, J. Kamoun, S. Jones, J. D. 2022-04-25 doi:10.1101/2022.04.25.489359 Cold Spring Harbor Laboratory Press 2022-04-25 <![CDATA[ Sensor NLR immune proteins activate oligomerization of their NRC helper ]]> https://biorxiv.org/cgi/content/short/2022.04.25.489342v1?rss=1" Contreras, M. P. Pai, H. Tumtas, Y. Duggan, C. Yuen, E. L. H. Vergara Cruces, A. Kourelis, J. Ahn, H.-K. Wu, C.-H. Bozkurt, T. O. Derevnina, L. Kamoun, S. 2022-04-25 doi:10.1101/2022.04.25.489342 Cold Spring Harbor Laboratory Press 2022-04-25 <![CDATA[ Pangenomics facilitated with structural analysis reveals host NAD+ manipulation as a major virulence activity of bacterial effectors ]]> https://biorxiv.org/cgi/content/short/2022.06.07.495176v1?rss=1" Hulin, M. Ma, W. 2022-06-07 doi:10.1101/2022.06.07.495176 Cold Spring Harbor Laboratory Press 2022-06-07 <![CDATA[ A pandemic clonal lineage of the wheat blast fungus ]]> https://biorxiv.org/cgi/content/short/2022.06.06.494979v1?rss=1" Latorre, S. M. Were, V. M. Foster, A. J. Langner, T. Malmgren, A. Harant, A. Asuke, S. Reyes-Avila, S. Gupta, D. R. Jensen, C. Ma, W. Mahmud, N. U. Mehebub, S. Mulenga, R. M. Muzahid, A. N. M. Paul, S. Rabby, F. S. M. Raha, A. A. M. Ryder, L. Shrestha, R.-K. Sichilima, S. Soanes, D. M. Singh, P. K. Bentley, A. R. Saunders, D. G. O. Tosa, Y. Croll, D. Lamour, K. H. Islam, T. Tembo, B. Win, J. Talbot, N. J. Burbano, H. A. Kamoun, S. 2022-06-07 doi:10.1101/2022.06.06.494979 Cold Spring Harbor Laboratory Press 2022-06-07 <![CDATA[ The soybean rust pathogen Phakopsora pachyrhizi displays transposable element proliferation that correlates with broad host-range adaptation on legumes ]]> https://biorxiv.org/cgi/content/short/2022.06.13.495685v1?rss=1" Gupta, Y. K. Marcelino-Guimaraes, F. C. Lorrain, C. Farmer, A. D. Haridas, S. Ferreira, E. G. C. Lopes-Caitar, V. S. Oliveira, L. S. Morin, E. Widdison, S. Cameron, C. Innoue, Y. Thor, K. Robinson, K. Drula, E. Henrissat, B. LaButti, K. Bini, A. M. R. Paget, E. Singan, V. Daum, C. Dorme, C. van Hoek, M. Janssen, A. Chandat, L. Tarriotte, Y. Richardson, J. Melo, B. d. V. A. Wittenberg, A. Schneiders, H. Peyrard, S. Zanardo, L. G. Holtman, V. C. Chauvel, F. C. Link, T. I. Balmer, D. Müller, A. N. Kind, S. Bohnert, S. Wirtz, L. Chen, C. Yan, M. Ng, V. G 2022-06-13 doi:10.1101/2022.06.13.495685 Cold Spring Harbor Laboratory Press 2022-06-13 <![CDATA[ Oligomerisation of a plant helper NLR requires cell-surface and intracellular immune receptor activation ]]> https://biorxiv.org/cgi/content/short/2022.06.16.496440v1?rss=1" Feehan, J. M. Wang, J. Sun, X. Choi, J. Ahn, H.-K. Ngou, B. P. M. Parker, J. E. Jones, J. D. 2022-06-17 doi:10.1101/2022.06.16.496440 Cold Spring Harbor Laboratory Press 2022-06-17 <![CDATA[ Effector target-guided engineering of an integrated domain expands the disease resistance profile of a rice NLR immune receptor ]]> https://biorxiv.org/cgi/content/short/2022.06.14.496076v1?rss=1" View larger version (77K): org.highwire.dtl.DTLVardef@23ec35org.highwire.dtl.DTLVardef@68b093org.highwire.dtl.DTLVardef@1209ab2org.highwire.dtl.DTLVardef@18c4adb_HPS_FORMAT_FIGEXP M_FIG C_FIG ]]> Maidment, J. H. Shimizu, M. Vera, S. Franceschetti, M. Longya, A. Stevenson, C. E. De la Concepcion, J. C. Bialas, A. Kamoun, S. Terauchi, R. Banfield, M. J. 2022-06-15 doi:10.1101/2022.06.14.496076 Cold Spring Harbor Laboratory Press 2022-06-15 <![CDATA[ Binding of a blast fungus Zinc-finger fold effector to a hydrophobic pocket in the host exocyst subunit Exo70 modulates immune recognition in rice ]]> https://biorxiv.org/cgi/content/short/2022.06.18.496527v1?rss=1" De la Concepcion, J. C. Fujisaki, K. Bentham, A. R. Cruz Mireles, N. Sanchez de Medina Hernandez, V. Shimizu, M. Lawson, D. M. Kamoun, S. Terauchi, R. Banfield, M. J. 2022-06-19 doi:10.1101/2022.06.18.496527 Cold Spring Harbor Laboratory Press 2022-06-19 <![CDATA[ The integrated LIM-peptidase domain of the CSA1/CHS3 paired immune receptor detects changes in DA1 family peptidase inhibitors to confer Albugo candida resistance in Arabidopsis. ]]> https://biorxiv.org/cgi/content/short/2022.06.21.497003v1?rss=1" Gu, B. Parkes, T. Smith, C. Lu, F.-H. McKenzie, N. Dong, H. Jones, J. D. G. Cevik, V. Bevan, M. W. 2022-06-23 doi:10.1101/2022.06.21.497003 Cold Spring Harbor Laboratory Press 2022-06-23 <![CDATA[ The transcriptional landscape of plant infection by the rice blast fungus Magnaporthe oryzae reveals distinct families of temporally co-regulated and structurally conserved effectors ]]> https://biorxiv.org/cgi/content/short/2022.07.18.500532v1?rss=1" Yan, X. Tang, B. Ryder, L. Maclean, D. Were, V. M. Eseola, A. B. Cruz-Mireles, N. Foster, A. Oses-Ruiz, M. Talbot, N. J. 2022-07-19 doi:10.1101/2022.07.18.500532 Cold Spring Harbor Laboratory Press 2022-07-19 <![CDATA[ Tangled gene-for-gene interactions mediate co-evolution of the rice NLR immune receptor Pik and blast fungus effector proteins ]]> https://biorxiv.org/cgi/content/short/2022.07.19.500555v1?rss=1" Sugihara, Y. Abe, Y. Takagi, H. Abe, A. Shimizu, M. Ito, K. Kanzaki, E. Oikawa, K. Kourelis, J. Langner, T. Win, J. Bialas, A. Ludke, D. Chuma, I. Saitoh, H. Kobayashi, M. Zheng, S. Tosa, Y. Banfield, M. J. Kamoun, S. Terauchi, R. Fujisaki, K. 2022-07-20 doi:10.1101/2022.07.19.500555 Cold Spring Harbor Laboratory Press 2022-07-20 <![CDATA[ The Solanum americanum pangenome and effectoromics reveal new resistance genes against potato late blight ]]> https://biorxiv.org/cgi/content/short/2022.08.11.503608v1?rss=1" Lin, X. Jia, Y. Heal, R. Prokchorchik, M. Sindalovskaya, M. Olave-Achury, A. Makechemu, M. Fairhead, S. Noureen, A. Heo, J. Witek, K. Smoker, M. Taylor, J. Shrestha, R.-K. Lee, Y. Y. Zhang, C. Park, S. J. sohn, k. h. Huang, S. Jones, J. D. 2022-08-11 doi:10.1101/2022.08.11.503608 Cold Spring Harbor Laboratory Press 2022-08-11 <![CDATA[ Wild grass isolates of Magnaporthe (Syn. Pyricularia) spp. from Germany can cause blast disease on cereal crops ]]> https://biorxiv.org/cgi/content/short/2022.08.29.505667v1?rss=1" Barragan, A. C. Latorre, S. M. Mock, P. G. Harant, A. Win, J. Malmgren, A. Burbano, H. A. Kamoun, S. Langner, T. 2022-08-29 doi:10.1101/2022.08.29.505667 Cold Spring Harbor Laboratory Press 2022-08-29 <![CDATA[ Direct measurement of appressorium turgor using a molecular mechanosensor in the rice blast fungus Magnaporthe oryzae ]]> https://biorxiv.org/cgi/content/short/2022.08.30.505899v1?rss=1" Ryder, L. S. Lopez, S. G. Michels, L. Eseola, A. B. Sprakel, J. Ma, W. Talbot, N. J. 2022-08-31 doi:10.1101/2022.08.30.505899 Cold Spring Harbor Laboratory Press 2022-08-31 <![CDATA[ Rgs1 is a regulator of effector gene expression during plant infection by the rice blast fungus Magnaporthe oryzae ]]> https://biorxiv.org/cgi/content/short/2022.09.04.506535v1?rss=1" Talbot, N. J. Tang, B. Yan, X. Ryder, L. S. Cruz-Mireles, N. Soanes, D. M. Molinari, C. Foster, A. J. 2022-09-05 doi:10.1101/2022.09.04.506535 Cold Spring Harbor Laboratory Press 2022-09-05 <![CDATA[ Allelic compatibility in plant immune receptors facilitates engineering of new effector recognition specificities. ]]> https://biorxiv.org/cgi/content/short/2022.10.10.511592v1?rss=1" Bentham, A. R. De la Concepcion, J. C. Benjumea, J. V. Jones, S. Mendel, M. Stubbs, J. Stevenson, C. E. Maidment, J. H. Kourelis, J. Zdrzalek, R. Kamoun, S. Banfield, M. J. 2022-10-11 doi:10.1101/2022.10.10.511592 Cold Spring Harbor Laboratory Press 2022-10-11 <![CDATA[ The N-terminal executioner domains of NLR immune receptors are functionally conserved across major plant lineages ]]> https://biorxiv.org/cgi/content/short/2022.10.19.512840v1?rss=1" Chia, K.-S. Kourelis, J. Vickers, M. Sakai, T. Kamoun, S. Carella, P. 2022-10-19 doi:10.1101/2022.10.19.512840 Cold Spring Harbor Laboratory Press 2022-10-19 <![CDATA[ Barley MLA3 recognizes the host-specificity determinant PWL2 from rice blast (M. oryzae) ]]> https://biorxiv.org/cgi/content/short/2022.10.21.512921v1?rss=1" Brabham, H. J. Gomez De La Cruz, D. Were, V. Shimizu, M. Saitoh, H. Hernandez-Pinzon, I. Green, P. Lorang, J. Fujisaki, K. Sato, K. Molnar, I. Simkova, H. Dolezel, J. Russell, J. Taylor, J. Smoker, M. Gupta, Y. K. Wolpert, T. Talbot, N. J. Terauchi, R. Moscou, M. J. 2022-10-22 doi:10.1101/2022.10.21.512921 Cold Spring Harbor Laboratory Press 2022-10-22 <![CDATA[ Extensive immune receptor repertoire diversity in disease-resistant rice landraces ]]> https://biorxiv.org/cgi/content/short/2022.12.05.519081v1?rss=1" Gladieux, P. van Oosterhout, C. Fairhead, S. Jouet, A. Ortiz, D. Ravel, S. Shrestha, R.-K. Frouin, J. He, X. Zhu, Y. Morel, J. B. Huang, H. Kroj, T. Jones, J. D. 2022-12-08 doi:10.1101/2022.12.05.519081 Cold Spring Harbor Laboratory Press 2022-12-08 <![CDATA[ Resurrection of plant disease resistance proteins via helper NLR bioengineering ]]> https://biorxiv.org/cgi/content/short/2022.12.11.519957v1?rss=1" Contreras, M. P. Pai, H. Selvaraj, M. Toghani, A. Lawson, D. M. Tumtas, Y. Duggan, C. Yuen, E. L. H. Stevenson, C. E. M. Harant, A. Wu, C.-H. Bozkurt, T. O. Kamoun, S. Derevnina, L. 2022-12-11 doi:10.1101/2022.12.11.519957 Cold Spring Harbor Laboratory Press 2022-12-11 <![CDATA[ Inducible TRAP RNA profiling reveals host genes expressed in Arabidopsis cells haustoriated by downy mildew ]]> https://biorxiv.org/cgi/content/short/2023.01.17.524393v1?rss=1" Asai, S. Cevik, V. Jones, J. D. G. Shirasu, K. 2023-01-20 doi:10.1101/2023.01.17.524393 Cold Spring Harbor Laboratory Press 2023-01-20 <![CDATA[ Evidence for a core set of microbial lichen symbionts from a global survey of metagenomes ]]> https://biorxiv.org/cgi/content/short/2023.02.02.524463v1?rss=1" Tagirdzhanova, G. Saary, P. Cameron, E. S. Garber, A. Diaz Escandon, D. Goyette, S. Tuovinen Nogerius, V. Passo, A. Mayrhofer, H. Holien, H. Tonsberg, T. Stein, L. Y. Finn, R. D. Spribille, T. 2023-02-02 doi:10.1101/2023.02.02.524463 Cold Spring Harbor Laboratory Press 2023-02-02 <![CDATA[ Seed Longevity is Controlled by Metacaspases ]]> https://biorxiv.org/cgi/content/short/2023.03.19.533321v1?rss=1" Liu, C. Hatzianestis, I. H. Pfirrmann, T. Reza, S. H. Minina, A. A. Moazzami, A. Stael, S. Gutierez-Beltran, E. Pitsili, E. Doermann, P. D Andrea, S. Gevaert, K. Romero-Campero, F. Ting, P. Nowack, M. K. Van Breusegem, F. Jones, J. D. Bozhkov, P. V. Moschou, P. N. 2023-03-20 doi:10.1101/2023.03.19.533321 Cold Spring Harbor Laboratory Press 2023-03-20 <![CDATA[ The immune receptor SNC1 monitors helper NLRs targeted by a bacterial effector ]]> https://biorxiv.org/cgi/content/short/2023.03.23.533910v1?rss=1" Wang, M. Chen, J. Wu, R. Guo, H. Chen, Y. Li, Z. Wei, L. Liu, C. He, S. Du, M. Guo, Y. Peng, Y.-L. Jones, J. D. Weigel, D. Huang, J. Zhu, W. 2023-03-24 doi:10.1101/2023.03.23.533910 Cold Spring Harbor Laboratory Press 2023-03-24 <![CDATA[ Cell type-specific responses to fungal infection in plants revealed by single-cell transcriptomics ]]> https://biorxiv.org/cgi/content/short/2023.04.03.535386v1?rss=1" Tang, B. Feng, L. Ding, P. Ma, W. 2023-04-04 doi:10.1101/2023.04.03.535386 Cold Spring Harbor Laboratory Press 2023-04-04 <![CDATA[ A GH81-type β-glucan-binding protein facilitates colonization by mutualistic fungi in barley ]]> https://biorxiv.org/cgi/content/short/2023.04.12.536646v1?rss=1" View larger version (39K): org.highwire.dtl.DTLVardef@c47957org.highwire.dtl.DTLVardef@fa6727org.highwire.dtl.DTLVardef@18a54d2org.highwire.dtl.DTLVardef@c6b103_HPS_FORMAT_FIGEXP M_FIG C_FIG In BriefGBP1, a family 81 glycoside hydrolase, is an important {beta}-glucan interactor in barley. Mutation of GBP1 and its sole paralogue GBP2 leads to reduced colonization by beneficial root endophytes, AM fungi and pathogens, accompanied by enhanced responses at the plant cell wall. This indicates that GBP1 and {beta}-glucans are compatibility factors involved in the establishment of symbiotic associations with beneficial fungi, a role possibly hijacked by pathogens. ]]> Wanke, A. van Boerdonk, S. Mahdi, L. K. Wawra, S. Neidert, M. Chandrasekar, B. Saake, P. Saur, I. M. L. Derbyshire, P. Holton, N. Menke, F. L. H. Brands, M. Pauly, M. Acosta, I. F. Zipfel, C. Zuccaro, A. 2023-04-13 doi:10.1101/2023.04.12.536646 Cold Spring Harbor Laboratory Press 2023-04-13 <![CDATA[ ATR2Cala2 from Arabidopsis-infecting downy mildew requires 4 TIR-NLR immune receptors for full recognition ]]> https://biorxiv.org/cgi/content/short/2023.04.25.538220v1?rss=1" Kim, D. S. Woods-Tör, A. Cevik, V. Furzer, O. J. Li, Y. Ma, W. Tör, M. Jones, J. D. 2023-04-25 doi:10.1101/2023.04.25.538220 Cold Spring Harbor Laboratory Press 2023-04-25 <![CDATA[ Pathogen protein modularity enables elaborate mimicry of a host phosphatase ]]> https://biorxiv.org/cgi/content/short/2023.05.05.539533v1?rss=1" Li, H. Wang, J. Kuan, T. Tang, B. Feng, L. Wang, J. Cheng, Z. Sklenar, J. Derbyshire, P. Hulin, M. Li, Y. Zhai, Y. Hou, Y. Menke, F. Wang, Y. Ma, W. 2023-05-05 doi:10.1101/2023.05.05.539533 Cold Spring Harbor Laboratory Press 2023-05-05 <![CDATA[ Cutin-Derived Oligomers Act as Damage-Associated Molecular Patterns in Arabidopsis thaliana ]]> https://biorxiv.org/cgi/content/short/2023.05.16.540997v1?rss=1" Moreira, C. J. Escorcio, R. Bento, A. Bjornson, M. Tome, A. S. Martins, C. Fanuel, M. Martins, I. Bakan, B. Zipfel, C. Silva Pereira, C. 2023-05-18 doi:10.1101/2023.05.16.540997 Cold Spring Harbor Laboratory Press 2023-05-18 <![CDATA[ pOPARA: Vectors for Golden Gate assembly of expression constructs containing the araBAD promoter ]]> https://biorxiv.org/cgi/content/short/2023.05.31.543011v1?rss=1" Milnes, L. Youles, M. Maidment, J. H. 2023-06-02 doi:10.1101/2023.05.31.543011 Cold Spring Harbor Laboratory Press 2023-06-02 <![CDATA[ Transgenic expression of Arabidopsis ELONGATION FACTOR-TU RECEPTOR (AtEFR) gene in banana enhances resistance to Banana Xanthomonas Wilt disease ]]> https://biorxiv.org/cgi/content/short/2023.06.06.543870v1?rss=1" Adero, M. Tripathi, J. Odour, R. Zipfel, C. Tripathi, L. 2023-06-07 doi:10.1101/2023.06.06.543870 Cold Spring Harbor Laboratory Press 2023-06-07 <![CDATA[ The phosphorylation landscape of infection-related development by the rice blast fungus ]]> https://biorxiv.org/cgi/content/short/2023.08.19.553964v1?rss=1" Cruz-Mireles, N. Oses-Ruiz, M. Derbyshire, P. Jegousse, C. Ryder, L. S. Bautista, M.-J. Eseola, A. B. Tang, B. Yan, X. Ma, W. Findlay, K. C. Were, V. MacLean, D. Talbot, N. J. Menke, F. L. H. 2023-08-20 doi:10.1101/2023.08.19.553964 Cold Spring Harbor Laboratory Press 2023-08-20 <![CDATA[ Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling ]]> https://biorxiv.org/cgi/content/short/2023.08.23.554490v1?rss=1" Mühlenbeck, H. Tsutsui, Y. Lemmon, M. Bender, K. W. Zipfel, C. 2023-08-25 doi:10.1101/2023.08.23.554490 Cold Spring Harbor Laboratory Press 2023-08-25 <![CDATA[ Genomic analysis of Coccomyxa viridis, a common low-abundance alga associated with lichen symbioses ]]> https://biorxiv.org/cgi/content/short/2023.09.13.557537v1?rss=1" Tagirdzhanova, G. Scharnagl, K. Yan, X. Talbot, N. J. 2023-09-13 doi:10.1101/2023.09.13.557537 Cold Spring Harbor Laboratory Press 2023-09-13 <![CDATA[ Duplication and neofunctionalization of a horizontally-transferred xyloglucanase as a facet of the red queen co-evolutionary dynamic ]]> https://biorxiv.org/cgi/content/short/2023.10.09.561229v1?rss=1" Attah, V. Milner, D. S. Fang, Y. Yan, X. Leonard, G. Heitman, J. Talbot, N. J. Richards, T. A. 2023-10-09 doi:10.1101/2023.10.09.561229 Cold Spring Harbor Laboratory Press 2023-10-09 <![CDATA[ Zinc-finger (ZiF) fold secreted effectors form a functionally diverse family across lineages of the blast fungus Magnaporthe oryzae. ]]> https://biorxiv.org/cgi/content/short/2023.10.18.562914v1?rss=1" Concepcion, J. C. D. l. Langner, T. Fujisaki, K. Were, V. Yan, X. Lam, A. H. C. Saado, I. Brabham, H. Win, J. Yoshida, K. Talbot, N. J. Terauchi, R. Kamoun, S. Banfield, M. J. 2023-10-20 doi:10.1101/2023.10.18.562914 Cold Spring Harbor Laboratory Press 2023-10-20 <![CDATA[ The NRC0 gene cluster of sensor and helper NLR immune receptors is functionally conserved across asterid plants ]]> https://biorxiv.org/cgi/content/short/2023.10.23.563533v1?rss=1" Sakai, T. Martinez-Anaya, C. Contreras, M. P. Kamoun, S. Wu, C.-H. Adachi, H. 2023-10-23 doi:10.1101/2023.10.23.563533 Cold Spring Harbor Laboratory Press 2023-10-23 <![CDATA[ Genetically-clustered antifungal phytocytokines and receptor proteins function together to trigger plant immune signaling ]]> https://biorxiv.org/cgi/content/short/2023.11.27.568785v1?rss=1" Lintz, J. Goto, Y. Bender, K. W. Bchini, R. Dubrulle, G. Cawston, E. Zipfel, C. Duplessis, S. PETRE, B. 2023-11-27 doi:10.1101/2023.11.27.568785 Cold Spring Harbor Laboratory Press 2023-11-27 <![CDATA[ Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana ]]> https://biorxiv.org/cgi/content/short/2023.11.29.569073v1?rss=1" Dias, M. G. Doss, B. Rawat, A. R. Siegel, K. R. Mahathanthrige, T. Sklenar, J. Derbyshire, P. Dharmasena, T. Cameron, E. Zipfel, C. Menke, F. Monaghan, J. 2023-12-01 doi:10.1101/2023.11.29.569073 Cold Spring Harbor Laboratory Press 2023-12-01 <![CDATA[ The nucleotide binding domain of NRC-dependent disease resistance proteins is sufficient to activate downstream helper NLR oligomerization and immune signaling ]]> https://biorxiv.org/cgi/content/short/2023.11.30.569466v1?rss=1" Contreras, M. P. Pai, H. Thompson, R. Claeys, J. Adachi, H. Kamoun, S. 2023-12-01 doi:10.1101/2023.11.30.569466 Cold Spring Harbor Laboratory Press 2023-12-01 <![CDATA[ A root-specific NLR network confers resistance to plant parasitic nematodes ]]> https://biorxiv.org/cgi/content/short/2023.12.14.571630v1?rss=1" Luedke, D. Sakai, T. Kourelis, J. Toghani, A. Adachi, H. Posbeyikian, A. Frijters, R. Pai, H. Harant, A. Ernst, K. Ganal, M. Verhage, A. Wu, C.-H. Kamoun, S. 2023-12-14 doi:10.1101/2023.12.14.571630 Cold Spring Harbor Laboratory Press 2023-12-14 <![CDATA[ Activation of plant immunity through conversion of a helper NLR homodimer into a resistosome ]]> https://biorxiv.org/cgi/content/short/2023.12.17.572070v1?rss=1" Selvaraj, M. Toghani, A. Pai, H. Sugihara, Y. Kourelis, J. Yuen, E. L. H. Ibrahim, T. Zhao, H. Xie, R. Maqbool, A. De la Concepcion, J. C. Banfield, M. J. Derevnina, L. Petre, B. Lawson, D. M. Bozkurt, T. O. Wu, C.-H. Kamoun, S. Contreras, M. P. 2023-12-18 doi:10.1101/2023.12.17.572070 Cold Spring Harbor Laboratory Press 2023-12-18 <![CDATA[ Functional divergence shaped the network architecture of plant immune receptors ]]> https://biorxiv.org/cgi/content/short/2023.12.12.571219v1?rss=1" Huang, C.-Y. Huang, Y.-S. Sugihara, Y. Wang, H.-Y. Huang, L.-T. Lopez-Agudelo, J. C. Chen, Y.-F. Lin, K.-Y. Chiang, B.-J. Toghani, A. Kourelis, J. Derevnina, L. Wu, C.-H. 2023-12-13 doi:10.1101/2023.12.12.571219 Cold Spring Harbor Laboratory Press 2023-12-13 <![CDATA[ The leucine-rich repeat receptor kinase QSK1 is a novel regulator of PRR-RBOHD complex and is employed by the bacterial effector HopF2Pto to modulate plant immunity ]]> https://biorxiv.org/cgi/content/short/2023.12.13.571443v1?rss=1" Goto, Y. Kadota, Y. Mbengue, M. Lewis, J. D. Matsui, H. Maki, N. Sklenar, J. Derbyshire, P. Shibata, A. Ichihashi, Y. Guttman, D. Nakagami, H. Suzuki, T. Menke, F. L. H. Robatzek, S. Desveaux, D. Zipfel, C. Shirasu, K. 2023-12-14 doi:10.1101/2023.12.13.571443 Cold Spring Harbor Laboratory Press 2023-12-14 <![CDATA[ Leveraging co-evolutionary insights and AI-based structural modeling to unravel receptor-peptide ligand-binding mechanisms ]]> https://biorxiv.org/cgi/content/short/2024.01.18.575556v1?rss=1" Snoeck, S. Lee, H. K. Schmid, M. W. Bender, K. W. Neeracher, M. J. Fernandez-Fernandez, A. D. Santiago, J. Zipfel, C. 2024-01-18 doi:10.1101/2024.01.18.575556 Cold Spring Harbor Laboratory Press 2024-01-18 <![CDATA[ Speedy benthi: Elongated photoperiods reduce the generation time of the model plant species Nicotiana benthamiana ]]> https://biorxiv.org/cgi/content/short/2024.01.18.576090v1?rss=1" Castle, M. Luedke, D. 2024-01-22 doi:10.1101/2024.01.18.576090 Cold Spring Harbor Laboratory Press 2024-01-22 <![CDATA[ The blast effector Pwl2 is a virulence factor that modifies the cellular localisation of host protein HIPP43 to suppress immunity. ]]> https://biorxiv.org/cgi/content/short/2024.01.20.576406v1?rss=1" Were, V. Yan, X. Foster, A. Sklenar, J. Langner, T. Bentham, A. Zdrzałek, R. Ryder, L. Kaimenyi, D. Gomez De La Cruz, D. Gentle, A. Petit-Houdenot, Y. Eseola, A. B. Smoker, M. Bautista, M. J. Ma, W. Kourelis, J. Maclean, D. Banfield, M. J. Kamoun, S. Menke, F. L. H. Moscou, M. J. Talbot, N. J. 2024-01-23 doi:10.1101/2024.01.20.576406 Cold Spring Harbor Laboratory Press 2024-01-23 <![CDATA[ Bioengineering secreted proteases converts divergent Rcr3 orthologs and paralogs into extracellular immune co-receptors ]]> https://biorxiv.org/cgi/content/short/2024.02.14.580413v1?rss=1" Kourelis, J. Schuster, M. Demir, F. Mattinson, O. Krauter, S. Kahlon, P. S. O'Grady, R. Royston, S. Bravo-Cazar, A. L. Mooney, B. C. Huesgen, P. F. Kamoun, S. van der Hoorn, R. A. L. 2024-02-15 doi:10.1101/2024.02.14.580413 Cold Spring Harbor Laboratory Press 2024-02-15 <![CDATA[ Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineages ]]> https://biorxiv.org/cgi/content/short/2024.02.13.580079v1?rss=1" Barragan, A. C. Latorre, S. M. Malmgren, A. Harant, A. Win, J. Sugihara, Y. Burbano, H. A. Kamoun, S. Langner, T. 2024-02-15 doi:10.1101/2024.02.13.580079 Cold Spring Harbor Laboratory Press 2024-02-15 <![CDATA[ A RALF-Brassinosteroid morpho-signaling circuit regulates Arabidopsis hypocotyl cell shape ]]> https://biorxiv.org/cgi/content/short/2024.03.28.587199v1?rss=1" Biermann, D. von Arx, M. Xhelilaj, K. Sere, D. Stegmann, M. Wolf, S. Zipfel, C. Gronnier, J. 2024-03-30 doi:10.1101/2024.03.28.587199 Cold Spring Harbor Laboratory Press 2024-03-30 <![CDATA[ An oomycete effector co-opts a host RabGAP protein to remodel pathogen interface and subvert defense-related secretion ]]> https://biorxiv.org/cgi/content/short/2024.01.11.575225v1?rss=1" Yuen, E. L. H. Tumtas, Y. Chan, L. I. Ibrahim, T. Evangelisti, E. Tulin, F. Sklenar, J. Menke, F. Kamoun, S. Bubeck, D. Schornack, S. Bozkurt, T. O. 2024-01-15 doi:10.1101/2024.01.11.575225 Cold Spring Harbor Laboratory Press 2024-01-15 <![CDATA[ Arabidopsis WALL-ASSOCIATED KINASES are not required for oligogalacturonide-induced signaling and immunity ]]> https://biorxiv.org/cgi/content/short/2024.04.15.589471v1?rss=1" Herold, L. Hua, C. Kohorn, B. Nuernberger, T. DeFalco, T. A. Zipfel, C. 2024-04-17 doi:10.1101/2024.04.15.589471 Cold Spring Harbor Laboratory Press 2024-04-17 <![CDATA[ Mechanosensing and Sphingolipid-Docking Mediate Lipopetide-Induced Immunity in Arabidopsis ]]> https://biorxiv.org/cgi/content/short/2023.07.04.547613v1?rss=1" Prsic, J. Gilliard, G. Ibrahim, H. Arguelles Arias, A. Rondelli, V. Crowet, J.-M. Genva, M. Luzuriaga Loaiza, W. P. Deboever, E. Nasir, N. Lins, L. Mathelie-Guinlet, M. Eschrig, S. Ranf, S. Dorey, S. De Coninck, B. Nurnberger, T. Mongrand, S. Hofte, M. Zipfel, C. Dufrene, Y. Deleu, M. Ongena, M. 2023-07-04 doi:10.1101/2023.07.04.547613 Cold Spring Harbor Laboratory Press 2023-07-04 <![CDATA[ Bioengineering a plant NLR immune receptor with a robust binding interface towards a conserved fungal pathogen effector ]]> https://biorxiv.org/cgi/content/short/2024.01.20.576400v1?rss=1" Zdrzalek, R. Xi, Y. Langner, T. Bentham, A. R. Petit-Houdenot, Y. De la Concepcion, J. C. Harant, A. Shimizu, M. Were, V. Talbot, N. J. Terauchi, R. J. Kamoun, S. Banfield, M. J. 2024-01-23 doi:10.1101/2024.01.20.576400 Cold Spring Harbor Laboratory Press 2024-01-23 <![CDATA[ Helper NLR immune protein NRC3 evolved to evade inhibition by a cyst nematode virulence effector ]]> https://biorxiv.org/cgi/content/short/2024.06.16.598756v1?rss=1" Sugihara, Y. Kourelis, J. Contreras, M. P. Pai, H. Selvaraj, M. Toghani, A. Martinez-Anaya, C. Kamoun, S. 2024-06-16 doi:10.1101/2024.06.16.598756 Cold Spring Harbor Laboratory Press 2024-06-16 <![CDATA[ A disease resistance protein triggers oligomerization of its NLR helper into a hexameric resistosome to mediate innate immunity ]]> https://biorxiv.org/cgi/content/short/2024.06.18.599586v1?rss=1" Madhuprakash, J. Toghani, A. Contreras, M. P. Posbeyikian, A. Richardson, J. Kourelis, J. Bozkurt, T. O. Webster, M. W. Kamoun, S. 2024-06-19 doi:10.1101/2024.06.18.599586 Cold Spring Harbor Laboratory Press 2024-06-19 <![CDATA[ Modular mechanisms of immune priming and growth inhibition mediated by plant effector-triggered immunity ]]> https://biorxiv.org/cgi/content/short/2024.02.01.578334v1?rss=1" Chhillar, H. Yeh, P.-M. Nguyen, H. H. Jones, J. D. Ding, P. 2024-02-01 doi:10.1101/2024.02.01.578334 Cold Spring Harbor Laboratory Press 2024-02-01 <![CDATA[ Discovery of functional NLRs using expression level, high-throughput transformation, and large-scale phenotyping ]]> https://biorxiv.org/cgi/content/short/2024.06.25.599845v1?rss=1" Brabham, H. J. Hernandez-Pinzon, I. Yanagihara, C. Ishikawa, N. Komori, T. Matny, O. N. Hubbard, A. Witek, K. Feist, A. Numazawa, H. Green, P. Dreiseitl, A. Takemori, N. Komari, T. Freedman, R. P. Steffenson, B. van Esse, H. P. Moscou, M. J. 2024-06-28 doi:10.1101/2024.06.25.599845 Cold Spring Harbor Laboratory Press 2024-06-28 <![CDATA[ Reversible ubiquitination of integrated domain controls paired NLR immune receptor complex homeostasis ]]> https://biorxiv.org/cgi/content/short/2024.07.01.599856v1?rss=1" Chen, Z. Huang, J.-h. Li, J. Menke, F. Jones, J. D. Guo, H. 2024-07-03 doi:10.1101/2024.07.01.599856 Cold Spring Harbor Laboratory Press 2024-07-03 <![CDATA[ Molecular mimicry of a pathogen virulence target by a plant immune receptor ]]> https://biorxiv.org/cgi/content/short/2024.07.26.605320v1?rss=1" Gomez De La Cruz, D. Zdrzałek, R. Banfield, M. J. Talbot, N. J. Moscou, M. J. 2024-07-26 doi:10.1101/2024.07.26.605320 Cold Spring Harbor Laboratory Press 2024-07-26 <![CDATA[ Transcriptomic profiling of Candidatus Liberibacter asiaticus in different citrus tissues reveals novel insights into Huanglongbing pathogenesis ]]> https://biorxiv.org/cgi/content/short/2024.09.02.610751v1?rss=1" Lovelace, A. H. Wang, C. Levy, A. Ma, W. 2024-09-02 doi:10.1101/2024.09.02.610751 Cold Spring Harbor Laboratory Press 2024-09-02 <![CDATA[ A helper NLR targets organellar membranes to trigger immunity ]]> https://biorxiv.org/cgi/content/short/2024.09.19.613839v1?rss=1" Ibrahim, T. Yuen, E. L. H. Wang, H.-Y. King, F. J. Toghani, A. Kourelis, J. Vuolo, C. Adamkova, V. Castel, B. Jones, J. D. Wu, C.-H. Kamoun, S. Bozkurt, T. O. 2024-09-22 doi:10.1101/2024.09.19.613839 Cold Spring Harbor Laboratory Press 2024-09-22 <![CDATA[ Can AI modelling of protein structures distinguish between sensor and helper NLR immune receptors? ]]> https://biorxiv.org/cgi/content/short/2024.11.24.625045v1?rss=1" Toghani, A. Terauchi, R. Kamoun, S. Sugihara, Y. 2024-11-26 doi:10.1101/2024.11.24.625045 Cold Spring Harbor Laboratory Press 2024-11-26 <![CDATA[ Conserved effectors underpin the virulence of liverwort-isolated Pseudomonas in divergent plants ]]> https://biorxiv.org/cgi/content/short/2024.12.03.626388v1?rss=1" Robinson, K. Buric, L. Grenz, K. Chia, K.-S. Hulin, M. T. Ma, W. Carella, P. 2024-12-03 doi:10.1101/2024.12.03.626388 Cold Spring Harbor Laboratory Press 2024-12-03 <![CDATA[ Chitin soil amendment triggers systemic plant disease resistance through enhanced pattern-triggered immunity ]]> https://biorxiv.org/cgi/content/short/2024.12.08.627391v1?rss=1" Makechemu, M. Goto, Y. Zbinden, H. Widrig, V. Keller, B. zipfel, c. 2024-12-10 doi:10.1101/2024.12.08.627391 Cold Spring Harbor Laboratory Press 2024-12-10 <![CDATA[ The phosphatase PP2C12 is a negative player in LRX-RALF-FER-mediated cell wall integrity sensing ]]> https://biorxiv.org/cgi/content/short/2024.11.05.622083v1?rss=1" Hou, X. Bender, K. W. Guerin, A. Kadler, G. Gupta, S. Haefliger, M. Diet, A. Roffler, S. Campanini, D. Wicker, T. Zipfel, C. Ringli, C. 2024-11-06 doi:10.1101/2024.11.05.622083 Cold Spring Harbor Laboratory Press 2024-11-06 <![CDATA[ The dominant lineage of Phakopsora pachyrhizi in the United States of America does not have a Brazilian origin ]]> https://biorxiv.org/cgi/content/short/2025.01.26.634911v1?rss=1" Ferreira, E. G. C. Inoue, Y. Murithi, H. M. Nardwattanawong, T. Cheema, J. Grootens, R. Paes, S. A. Mahuku, G. Joosten, M. H. A. J. Hartman, G. Yamaoka, Y. Brommonschenkel, S. H. van Esse, H. P. Gupta, Y. K. 2025-01-27 doi:10.1101/2025.01.26.634911 Cold Spring Harbor Laboratory Press 2025-01-27 <![CDATA[ A Witches' Broom Phytoplasma effector induces stunting by stabilizing a bHLH transcription factor in plants ]]> https://biorxiv.org/cgi/content/short/2024.12.24.629987v1?rss=1" Yang, S. Lovelace, A. Yuan, Y. Nie, H. Chen, W. Gao, Y. Bo, W. B. Nagel, D. H. Pang, X. Ma, W. 2024-12-24 doi:10.1101/2024.12.24.629987 Cold Spring Harbor Laboratory Press 2024-12-24 <![CDATA[ A hierarchical immune receptor network in lettuce reveals contrasting patterns of evolution in sensor and helper NLRs ]]> https://biorxiv.org/cgi/content/short/2025.02.25.639832v1?rss=1" Pai, H. Sakai, T. Posbeyikian, A. Frijters, R. Sugihara, Y. Contreras, M. P. Kourelis, J. Adachi, H. Kamoun, S. Toghani, A. 2025-02-25 doi:10.1101/2025.02.25.639832 Cold Spring Harbor Laboratory Press 2025-02-25 <![CDATA[ A plant pathogen effector blocks stepwise assembly of a helper NLR resistosome ]]> https://biorxiv.org/cgi/content/short/2025.07.14.664264v1?rss=1" Seager, B. A. Harant, A. Contreras, M. P. Hou, L.-Y. Wu, C.-H. Kamoun, S. Madhuprakash, J. 2025-07-14 doi:10.1101/2025.07.14.664264 Cold Spring Harbor Laboratory Press 2025-07-14 <![CDATA[ β-sheet stabilization of the island domain underlies ligand-induced LRR-RP activation of plant immune signaling ]]> https://biorxiv.org/cgi/content/short/2025.07.07.663532v1?rss=1" Snoeck, S. Zhang, L. Studer, V. Kim, G. Fernandez-Fernandez, A. D. Nuernberger, T. zipfel, c. 2025-07-09 doi:10.1101/2025.07.07.663532 Cold Spring Harbor Laboratory Press 2025-07-09 <![CDATA[ The autoactivity of tomato helper NLR immune proteins of the NRC clade is unaltered in prf mutants of Nicotiana benthamiana ]]> https://biorxiv.org/cgi/content/short/2025.03.11.642614v1?rss=1" Luedke, D. Pai, H. Toghani, A. Harant, A. Wu, C.-H. Kamoun, S. 2025-03-13 doi:10.1101/2025.03.11.642614 Cold Spring Harbor Laboratory Press 2025-03-13 <![CDATA[ Recognition-dependent activation of the RRS1-R/RPS4 immune receptor complex ]]> https://biorxiv.org/cgi/content/short/2025.04.11.646618v1?rss=1" Ahn, H.-K. Guo, G. Sklenar, J. Keh, S. P. Y. Huh, S. U. Hulin, M. T. Burdett, H. Sindalovskaya, M. Choi, J. Mukhi, N. Zhao, H. Knorr, L. Banfield, M. J. Menke, F. Ma, W. Jones, J. D. 2025-04-14 doi:10.1101/2025.04.11.646618 Cold Spring Harbor Laboratory Press 2025-04-14 <![CDATA[ Two genetically linked Arabidopsis TIR-type NLRs are required for immunity and interact with NLRs encoded in a segmentally duplicated genomic region ]]> https://biorxiv.org/cgi/content/short/2025.04.25.650432v1?rss=1" Luedke, D. Yan, Q. Zirngibl, M.-E. Roth, C. Klenke, M. Gunkel, A. Wiermer, M. 2025-04-26 doi:10.1101/2025.04.25.650432 Cold Spring Harbor Laboratory Press 2025-04-26 <![CDATA[ MIK2 clade receptor function in perception of a Fusarium-derived elicitor is conserved among different plant families ]]> https://biorxiv.org/cgi/content/short/2025.05.22.655486v1?rss=1" Maroschek, J. Roesgen, Y. Roessner, C. Snoeck, S. Schwechheimer, C. Zipfel, C. Hueckelhoven, R. 2025-05-23 doi:10.1101/2025.05.22.655486 Cold Spring Harbor Laboratory Press 2025-05-23 <![CDATA[ New alleles of Arabidopsis BIK1 reinforce its predominant role in pattern-triggered immunity and caution interpretations of other reported functions ]]> https://biorxiv.org/cgi/content/short/2025.06.02.657414v1?rss=1" Song, B. Choi, S. Kong, L. Kim, S.-I. Fliegmann, J. Li, X. DeFalco, T. A. Hu, M. Li, M. Zhao, Y. Wang, H. Shan, L. Nuernberger, T. He, P. zipfel, c. Zhou, J.-M. 2025-06-06 doi:10.1101/2025.06.02.657414 Cold Spring Harbor Laboratory Press 2025-06-06 <![CDATA[ Defense-Suppressive Fragments of RIN4 generated by AvrRpt2 Participate in NDR1-dependent Activation of RPS2 ]]> https://biorxiv.org/cgi/content/short/2025.06.02.656948v1?rss=1" Afzal, A. J. Alam, M. Huang, J. Agha, M. Da Cunha, L. Iqbal Rai, M. Tahir, J. Jamroze, A. Jones, J. D. Mackey, D. 2025-06-04 doi:10.1101/2025.06.02.656948 Cold Spring Harbor Laboratory Press 2025-06-04 <![CDATA[ Cell-type-specific execution of effector-triggered immunity ]]> https://biorxiv.org/cgi/content/short/2025.06.28.662111v1?rss=1" Chhillar, H. Jo, L. Redkar, A. Kajala, K. Jones, J. D. Ding, P. 2025-07-01 doi:10.1101/2025.06.28.662111 Cold Spring Harbor Laboratory Press 2025-07-01 <![CDATA[ An effector from the potato late blight pathogen bridges ENTH-domain protein TOL9a to an activated helper NLR to suppress immunity ]]> https://biorxiv.org/cgi/content/short/2025.07.06.663370v1?rss=1" Madhuprakash, J. Toghani, A. Pai, H. Harvey, M. Bentham, A. R. Seager, B. A. Yuen, E. L. H. De la Concepcion, J. C. Lawson, D. M. Stevenson, C. E. M. Vergara-Cruces, A. Derevnina, L. Bozkurt, T. O. Banfield, M. J. Kamoun, S. Contreras, M. P. 2025-07-08 doi:10.1101/2025.07.06.663370 Cold Spring Harbor Laboratory Press 2025-07-08 <![CDATA[ A conserved small RNA-generating gene cluster undergoes sequence diversification and contributes to plant immunity ]]> https://biorxiv.org/cgi/content/short/2025.07.20.665670v1?rss=1" Feng, L. Hou, Y. Toghani, A. Wang, Z. Tang, B. Atkinson, N. Li, H. Qiao, Y. Wang, Y. Hua, J. Zhai, J. Ma, W. 2025-07-21 doi:10.1101/2025.07.20.665670 Cold Spring Harbor Laboratory Press 2025-07-21 <![CDATA[ Rewinding the tape: historical contingency and functional constraints have shaped the evolution of APikL virulence effectors in the blast fungus ]]> https://biorxiv.org/cgi/content/short/2025.08.12.669671v1?rss=1" Langner, T. Maqbool, A. Kamoun, S. 2025-08-12 doi:10.1101/2025.08.12.669671 Cold Spring Harbor Laboratory Press 2025-08-12 <![CDATA[ A Phosphorelay Circuit Drives Extracellular Alkalinization in Plant Receptor Kinase Signaling ]]> https://biorxiv.org/cgi/content/short/2025.08.16.670655v1?rss=1" Zhai, K. Derbyshire, P. Zhang, S. Choi, S. Wang, L. Song, B. Kinoshita, T. Zhou, J.-M. Menke, F. Bender, K. W. Zipfel, C. 2025-08-20 doi:10.1101/2025.08.16.670655 Cold Spring Harbor Laboratory Press 2025-08-20 <![CDATA[ An activated wheat CCG10-NLR immune receptor forms an octameric resistosome ]]> https://biorxiv.org/cgi/content/short/2025.08.26.672026v1?rss=1" Guo, G. Zhao, H. Bai, K. Wu, Q. Dong, L. Lu, L. Chen, Y. Hou, Y. Lu, J. Lu, P. Li, M. Zhang, H. Wang, G. Zhu, K. Huang, B. Cui, X. Fu, H. Hu, C. Chu, Z. Lyu, X. Kamoun, S. Wang, C. Liu, Z. Selvaraj, M. Jones, J. D. 2025-08-27 doi:10.1101/2025.08.26.672026 Cold Spring Harbor Laboratory Press 2025-08-27 <![CDATA[ Synchronous spatio-temporal control of autophagy and organelle trafficking is necessary for appressorium-mediated plant infection by Magnaporthe oryzae ]]> https://biorxiv.org/cgi/content/short/2025.10.06.680644v1?rss=1" Eseola, A. B. Yan, X. Oses-Ruiz, M. Ryder, L. S. Egan, M. J. MacLean, D. Talbot, N. J. 2025-10-06 doi:10.1101/2025.10.06.680644 Cold Spring Harbor Laboratory Press 2025-10-06 <![CDATA[ A secreted citrus protease cleaves an outer membrane protein of the Huanglongbing pathogen ]]> https://biorxiv.org/cgi/content/short/2025.10.06.680679v1?rss=1" McClelland, A. J. Hu, B. Xu, Y. Wang, C. Lovelace, A. H. Hawara, E. Wang, Y. Pang, Z. De Francesco, A. Levy, A. Wang, N. van der Hoorn, R. XU, Q. Ma, W. 2025-10-06 doi:10.1101/2025.10.06.680679 Cold Spring Harbor Laboratory Press 2025-10-06 <![CDATA[ An elevated environmental temperature impairs accumulation of the pattern recognition receptor FLS2 ]]> https://biorxiv.org/cgi/content/short/2025.10.20.683271v1?rss=1" Jacobs, B. C. I. C. Knight, M. R. Bender, K. W. Six, E. Zipfel, C. 2025-10-20 doi:10.1101/2025.10.20.683271 Cold Spring Harbor Laboratory Press 2025-10-20 <![CDATA[ Pathogen effector forms a hexameric phosphatase holoenzyme with host core enzyme to promote disease ]]> https://biorxiv.org/cgi/content/short/2025.06.14.659724v1?rss=1" Wang, J. Li, H. Sun, W. Wang, J. Fang, X. Yang, X. Liu, C. Sheng, G. Ma, W. Wang, Y. 2025-06-18 doi:10.1101/2025.06.14.659724 Cold Spring Harbor Laboratory Press 2025-06-18 <![CDATA[ Uncoupling hypersensitive cell death response and disease resistance activated by effector-triggered immunity ]]> https://biorxiv.org/cgi/content/short/2025.10.22.683861v1?rss=1" Chhillar, H. Schoonbeek, H.-j. Ngou, B. P. M. Jones, J. D. Ding, P. 2025-10-23 doi:10.1101/2025.10.22.683861 Cold Spring Harbor Laboratory Press 2025-10-23 <![CDATA[ Disulfide bond sculpts a peptide fold that mediates phytocytokine recognition ]]> https://biorxiv.org/cgi/content/short/2025.10.24.684422v1?rss=1" Jimenez Sandoval, P. Johanndrees, O. Snoeck, S. Harshith, C. Y. Omary, M. Broyart, C. Rhodes, J. Bender, K. W. Zipfel, C. Santiago, J. 2025-10-24 doi:10.1101/2025.10.24.684422 Cold Spring Harbor Laboratory Press 2025-10-24 <![CDATA[ Diverse haplotypes at a complex Solanum americanum locus confer resistance to Phytophthora infestans and P. capsici ]]> https://biorxiv.org/cgi/content/short/2025.10.31.685743v1?rss=1" Heal, R. Olave-Achury, A. C. Sindalovskaya, M. Long, L. Karki, H. S. Taylor, J. Wawryk-Khamdavong, A. Bachowska, K. Smoker, M. Alam, M. Pottinger, S. Arora, V. Sohn, K. H. Witek, K. Lin, X. Jones, J. D. G. 2025-10-31 doi:10.1101/2025.10.31.685743 Cold Spring Harbor Laboratory Press 2025-10-31 <![CDATA[ Tangerine: a Starship-like element in the genomes of Xanthoria lichen-forming fungi ]]> https://biorxiv.org/cgi/content/short/2025.11.25.690456v1?rss=1" Tagirdzhanova, G. Bucknell, A. Cameron, E. S. Finn, R. D. Blaxter, M. McDonald, M. C. Talbot, N. J. 2025-11-27 doi:10.1101/2025.11.25.690456 Cold Spring Harbor Laboratory Press 2025-11-27 <![CDATA[ Engineering an Exo70 integrated domain of a barley NLR for improved blast resistance ]]> https://biorxiv.org/cgi/content/short/2024.12.24.630226v1?rss=1" Saado, I. Brabham, H. Bennett, J. W. Lam, A. H. C. Hernandez-Pinzon, I. Moscou, M. J. Concepcion, J. C. D. l. Banfield, M. J. 2024-12-24 doi:10.1101/2024.12.24.630226 Cold Spring Harbor Laboratory Press 2024-12-24 <![CDATA[ The Pik NLR pair accumulates at the plasma membrane as a hetero-oligomeric sensor-helper immune protein complex prior to activation ]]> https://biorxiv.org/cgi/content/short/2025.11.30.691369v1?rss=1" Pai, H. Contreras, M. P. Salguero Linares, J. Luedke, D. Posbeyikian, A. Kourelis, J. Kamoun, S. Marchal, C. 2025-12-02 doi:10.64898/2025.11.30.691369 Cold Spring Harbor Laboratory Press 2025-12-02 <![CDATA[ An embryo-derived peptide signal directs endosperm polarity in Arabidopsis ]]> https://biorxiv.org/cgi/content/short/2025.12.11.693621v1?rss=1" Creff, A. Rhodes, J. Salaun, C. Larive, J. Bayle, V. Turley, E. Nobori, T. Figueiredo, D. D. Landrein, B. Zipfel, C. Ingram, G. 2025-12-13 doi:10.64898/2025.12.11.693621 Cold Spring Harbor Laboratory Press 2025-12-13 <![CDATA[ Diploid potato lines for the study and improvement of starch metabolism and structure ]]> https://biorxiv.org/cgi/content/short/2025.12.19.695480v1?rss=1" Navarro, T. Dolaptchiev, Y. Bello, O. O'Brien, C. Ortiz, A. Jones, J. D. Seung, D. 2025-12-22 doi:10.64898/2025.12.19.695480 Cold Spring Harbor Laboratory Press 2025-12-22 <![CDATA[ An ancient alkalinization factor informs Arabidopsis root development ]]> https://biorxiv.org/cgi/content/short/2025.12.22.695669v1?rss=1" Xhelilaj, K. von Arx, M. Biermann, D. Parvanov, A. Faiss, N. Monte, I. Klingelhuber, F. Zipfel, C. Timmermans, M. Oecking, C. Gronnier, J. 2025-12-23 doi:10.64898/2025.12.22.695669 Cold Spring Harbor Laboratory Press 2025-12-23 <![CDATA[ Structural basis for heat tolerance in plant NLR immune receptors. ]]> https://biorxiv.org/cgi/content/short/2025.12.17.694812v1?rss=1" Grech-Baran, M. Witek, K. Ahn, H.-K. Lichocka, M. Vargas-Cortez, T. Barymow-Filoniuk, I. Witek, A. I. Hennig, J. Jones, J. D. Poznanski, J. T. 2025-12-17 doi:10.64898/2025.12.17.694812 Cold Spring Harbor Laboratory Press 2025-12-17 <![CDATA[ Integrating and refining the predictions of ensembled plant effector detection programs using machine learning ]]> https://biorxiv.org/cgi/content/short/2025.12.17.694896v1?rss=1" Odunlami, L. MacLean, D. 2025-12-19 doi:10.64898/2025.12.17.694896 Cold Spring Harbor Laboratory Press 2025-12-19 <![CDATA[ AMBER and GOLD: Polycistronic Genes for Betaxanthin Production in Plants ]]> https://biorxiv.org/cgi/content/short/2026.01.14.699277v1?rss=1" Desnoyer, N. Hill, L. Youles, M. Kamoun, S. 2026-01-14 doi:10.64898/2026.01.14.699277 Cold Spring Harbor Laboratory Press 2026-01-14 <![CDATA[ NLR immune receptors can exhibit tissue-specific expression patterns across legume species ]]> https://biorxiv.org/cgi/content/short/2026.01.25.701577v1?rss=1" Marques, R. M. Santos, C. Pai, H. Patto, M. C. V. Kamoun, S. Kourelis, J. 2026-01-26 doi:10.64898/2026.01.25.701577 Cold Spring Harbor Laboratory Press 2026-01-26 <![CDATA[ Structural basis for the broad recognition specificity of an Arabidopsis immune receptor ]]> https://biorxiv.org/cgi/content/short/2026.02.04.703898v1?rss=1" Zhao, H. Szymansky, C.-M. Lyu, X. Huang, J. Derbyshire, P. Menke, F. L. H. Webster, M. M. Kamoun, S. Selvaraj, M. Jones, J. D. G. 2026-02-07 doi:10.64898/2026.02.04.703898 Cold Spring Harbor Laboratory Press 2026-02-07 <![CDATA[ Conservation of an immune homeostasis module in land plants ]]> https://biorxiv.org/cgi/content/short/2024.10.01.616128v1?rss=1" Dou, R. El Mahboubi, K. Tanney, C. A. S. Chu, J. Bredow, M. Gallo, M. C. R. Lauressergues, D. Keller, J. Miguel, V. N. DeFalco, T. A. Uhrig, R. G. Zipfel, C. Delaux, P.-M. Monaghan, J. 2024-10-01 doi:10.1101/2024.10.01.616128 Cold Spring Harbor Laboratory Press 2024-10-01 <![CDATA[ A specialized ARGONAUTE enables trans-species RNA interference in plant immunity ]]> https://biorxiv.org/cgi/content/short/2026.02.18.706620v1?rss=1" Wang, M. Yang, C. Yuen, E. L. Fang, X. Qi, F. Yang, S. Koch, B. L. Li, K. Hou, Y. Oh, T. Tang, B. Feng, L. Zhang, X. Bozkurt, T. O. Feng, X. Ma, W. 2026-02-19 doi:10.64898/2026.02.18.706620 Cold Spring Harbor Laboratory Press 2026-02-19 <![CDATA[ The Receptor Kinase MEE39/ATHE Mediates Cell Wall Integrity Surveillance During Root Vascular Pathogen Infection ]]> https://biorxiv.org/cgi/content/short/2026.03.05.708959v1?rss=1" Montesinos, J. C. Martin-Dacal, M. Huang, H.-Y. Sancho-Andres, G. Rama, F. Carrillo, L. Kashyap, A. Jimenez-Jimenez, A. Gamez-Arjona, F. M. Broyart, C. Yang, H. Coll, N. S. Santiago, J. Zipfel, C. Sanchez-Rodriguez, C. 2026-03-06 doi:10.64898/2026.03.05.708959 Cold Spring Harbor Laboratory Press 2026-03-06 <![CDATA[ Plasma membrane nanoscale dynamics of Arabidopsis leucine-rich repeat receptor kinase complexes ]]> https://biorxiv.org/cgi/content/short/2026.03.05.709869v1?rss=1" von Arx, M. Jolivet, M.-D. Biermann, D. Gabani, V. Andrews, S. S. Zipfel, C. S. Gronnier, J. 2026-03-06 doi:10.64898/2026.03.05.709869 Cold Spring Harbor Laboratory Press 2026-03-06 <![CDATA[ Stepwise and lineage-specific divergence of a major immune co-chaperone complex in leptosporangiate ferns ]]> https://biorxiv.org/cgi/content/short/2025.12.17.694876v1?rss=1" Jeong, H.-M. Sugihara, Y. Webster, M. W. Carella, P. 2025-12-17 doi:10.64898/2025.12.17.694876 Cold Spring Harbor Laboratory Press 2025-12-17 <![CDATA[ Transposable Element Diversification and the Evolution of Peltigerales Lichen Symbionts ]]> https://biorxiv.org/cgi/content/short/2026.02.14.705750v1?rss=1" Cameron, E. S. Tremblay, B. J.-M. Yahr, R. Blaxter, M. Finn, R. D. 2026-02-15 doi:10.64898/2026.02.14.705750 Cold Spring Harbor Laboratory Press 2026-02-15