bioRxiv Channel: Neuromatch Conference https://biorxiv.org This feed contains articles for bioRxiv Channel "Neuromatch Conference" bioRxiv bioRxiv https://biorxiv.org <![CDATA[ A unified physiological framework of transitions between seizures, status epilepticus and depolarization block at the single neuron level ]]> https://biorxiv.org/cgi/content/short/2020.10.23.352021v1?rss=1" Depannemaecker, D. Ivanov, A. Lillo, D. Spek, L. Bernard, C. Jirsa, V. 2020-10-23 doi:10.1101/2020.10.23.352021 Cold Spring Harbor Laboratory Press 2020-10-23 <![CDATA[ Confidence-controlled Hebbian learning efficiently extracts category membership from stimuli encoded in view of a categorization task ]]> https://biorxiv.org/cgi/content/short/2020.08.06.239533v1?rss=1" Berlemont, K. Nadal, J.-P. 2020-08-07 doi:10.1101/2020.08.06.239533 Cold Spring Harbor Laboratory Press 2020-08-07 <![CDATA[ Parietal and Motor Cortical Dynamics Differentially Shape the Computation of Choice History Bias ]]> https://biorxiv.org/cgi/content/short/2021.10.09.463755v1?rss=1" Urai, A. E. Donner, T. H. 2021-10-12 doi:10.1101/2021.10.09.463755 Cold Spring Harbor Laboratory Press 2021-10-12 <![CDATA[ Modelling the neural code in large populations of correlated neurons ]]> https://biorxiv.org/cgi/content/short/2020.11.05.369827v1?rss=1" Sokoloski, S. Aschner, A. Coen-Cagli, R. 2020-11-06 doi:10.1101/2020.11.05.369827 Cold Spring Harbor Laboratory Press 2020-11-06 <![CDATA[ Context-dependent selectivity to natural scenes in the retina ]]> https://biorxiv.org/cgi/content/short/2021.10.01.462157v1?rss=1" Goldin, M. A. Lefebvre, B. Virgili, S. Ecker, A. Mora, T. Ferrari, U. Marre, O. 2021-10-03 doi:10.1101/2021.10.01.462157 Cold Spring Harbor Laboratory Press 2021-10-03 <![CDATA[ Preserved motor representations after paralysis ]]> https://biorxiv.org/cgi/content/short/2021.10.07.463105v1?rss=1" Guan, C. Aflalo, T. Zhang, C. Rosario, E. R. Pouratian, N. Andersen, R. A. 2021-10-09 doi:10.1101/2021.10.07.463105 Cold Spring Harbor Laboratory Press 2021-10-09 <![CDATA[ Ultrastructural analysis of dendritic spine necks reveals a continuum of spine morphologies ]]> https://biorxiv.org/cgi/content/short/2021.02.18.431725v1?rss=1" Ofer, N. Berger, D. R. Kasthuri, N. Lichtman, J. W. Yuste, R. 2021-02-18 doi:10.1101/2021.02.18.431725 Cold Spring Harbor Laboratory Press 2021-02-18 <![CDATA[ A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics ]]> https://biorxiv.org/cgi/content/short/2021.08.31.458365v1?rss=1" Goldman, J. S. Kusch, L. Yalcinkaya, B. H. Depannemaecker, D. Nghiem, T.-A. E. Jirsa, V. Destexhe, A. 2021-09-01 doi:10.1101/2021.08.31.458365 Cold Spring Harbor Laboratory Press 2021-09-01 <![CDATA[ Rat sensitivity to multipoint statistics is predicted by efficient coding of natural scenes ]]> https://biorxiv.org/cgi/content/short/2021.05.17.444510v1?rss=1" Caramellino, R. Piasini, E. Buccellato, A. Carboncino, A. Balasubramanian, V. Zoccolan, D. 2021-05-18 doi:10.1101/2021.05.17.444510 Cold Spring Harbor Laboratory Press 2021-05-18 <![CDATA[ Predictive coding is a consequence of energy efficiency in recurrent neural networks ]]> https://biorxiv.org/cgi/content/short/2021.02.16.430904v1?rss=1" Ali, A. Ahmad, N. de Groot, E. van Gerven, M. A. J. Kietzmann, T. C. 2021-02-16 doi:10.1101/2021.02.16.430904 Cold Spring Harbor Laboratory Press 2021-02-16 <![CDATA[ A neural network account of memory replay and knowledge consolidation ]]> https://biorxiv.org/cgi/content/short/2021.05.25.445587v1?rss=1" Barry, D. N. Love, B. C. 2021-05-26 doi:10.1101/2021.05.25.445587 Cold Spring Harbor Laboratory Press 2021-05-26 <![CDATA[ Stimulus-specific plasticity in human visual gamma-band activity and functional connectivity ]]> https://biorxiv.org/cgi/content/short/2020.11.13.381467v1?rss=1" Stauch, B. J. Peter, A. Schuler, H. Fries, P. 2020-11-13 doi:10.1101/2020.11.13.381467 Cold Spring Harbor Laboratory Press 2020-11-13 <![CDATA[ Cryptographic-like mechanism allows scatter-hoarders to cache and retrieve their food secretly ]]> https://biorxiv.org/cgi/content/short/2021.08.11.455910v1?rss=1" Forkosh, O. 2021-08-11 doi:10.1101/2021.08.11.455910 Cold Spring Harbor Laboratory Press 2021-08-11 <![CDATA[ Separated and overlapping neural coding of face and body identity ]]> https://biorxiv.org/cgi/content/short/2021.01.30.428936v1?rss=1" Foster, C. Zhao, M. Bolkart, T. Black, M. J. Bartels, A. Buelthoff, I. 2021-02-01 doi:10.1101/2021.01.30.428936 Cold Spring Harbor Laboratory Press 2021-02-01 <![CDATA[ Directly interfacing brain and deep networks exposes non-hierarchical visual processing ]]> https://biorxiv.org/cgi/content/short/2021.06.28.450213v1?rss=1" Sexton, N. J. Love, B. C. 2021-06-29 doi:10.1101/2021.06.28.450213 Cold Spring Harbor Laboratory Press 2021-06-29 <![CDATA[ Online learning for orientation estimation during translation in an insect ring attractor network ]]> https://biorxiv.org/cgi/content/short/2021.01.07.425323v1?rss=1" Robinson, B. S. Norman-Tenazas, R. Cervantes, M. Symonette, D. Johnson, E. C. Joyce, J. Rivlin, P. K. Hwang, G. Zhang, K. Gray-Roncal, W. R. 2021-01-07 doi:10.1101/2021.01.07.425323 Cold Spring Harbor Laboratory Press 2021-01-07 <![CDATA[ Flygenvectors: The spatial and temporal structure of neural activity across the fly brain ]]> https://biorxiv.org/cgi/content/short/2021.09.25.461804v1?rss=1" Schaffer, E. S. Mishra, N. Whiteway, M. R. Li, W. Vancura, M. B. Freedman, J. Patel, K. B. Voleti, V. Paninski, L. Hillman, E. M. C. Abbott, L. Axel, R. 2021-09-26 doi:10.1101/2021.09.25.461804 Cold Spring Harbor Laboratory Press 2021-09-26 <![CDATA[ Structured random receptive fields enable informative sensory encodings ]]> https://biorxiv.org/cgi/content/short/2021.09.09.459651v1?rss=1" Pandey, B. Pachitariu, M. Brunton, B. W. Harris, K. D. 2021-09-11 doi:10.1101/2021.09.09.459651 Cold Spring Harbor Laboratory Press 2021-09-11 <![CDATA[ A novel theoretical framework for simultaneous measurement of excitatory and inhibitory conductances ]]> https://biorxiv.org/cgi/content/short/2021.03.30.437555v1?rss=1" Muller-Komorowska, D. Parabucki, A. Elyasaf, G. Katz, Y. Beck, H. Lampl, I. 2021-03-30 doi:10.1101/2021.03.30.437555 Cold Spring Harbor Laboratory Press 2021-03-30 <![CDATA[ Transient neuronal suppression for exploitation of new sensory evidence ]]> https://biorxiv.org/cgi/content/short/2020.11.29.403089v1?rss=1" Shinn, M. Lee, D. Murray, J. D. Seo, H. 2020-11-30 doi:10.1101/2020.11.29.403089 Cold Spring Harbor Laboratory Press 2020-11-30 <![CDATA[ Learning accurate path integration in a ring attractor model of the head direction system ]]> https://biorxiv.org/cgi/content/short/2021.03.12.435035v1?rss=1" Vafidis, P. Owald, D. D'Albis, T. Kempter, R. 2021-03-12 doi:10.1101/2021.03.12.435035 Cold Spring Harbor Laboratory Press 2021-03-12 <![CDATA[ Dynamic task-belief is an integral part of decision-making ]]> https://biorxiv.org/cgi/content/short/2021.04.05.438491v1?rss=1" Xue, C. Kramer, L. E. Cohen, M. R. 2021-04-06 doi:10.1101/2021.04.05.438491 Cold Spring Harbor Laboratory Press 2021-04-06 <![CDATA[ How the insect central complex could coordinate multimodal navigation ]]> https://biorxiv.org/cgi/content/short/2021.08.18.456777v1?rss=1" Sun, X. Yue, S. Mangan, M. 2021-08-19 doi:10.1101/2021.08.18.456777 Cold Spring Harbor Laboratory Press 2021-08-19 <![CDATA[ Resilience through diversity: Loss of neuronal heterogeneity in epileptogenic human tissue renders neural networks more susceptible to sudden changes in synchrony ]]> https://biorxiv.org/cgi/content/short/2021.03.02.433627v1?rss=1" Rich, S. Moradi Chameh, H. Lefebvre, J. Valiante, T. A. 2021-03-03 doi:10.1101/2021.03.02.433627 Cold Spring Harbor Laboratory Press 2021-03-03 <![CDATA[ Experience-related remapping of temporal encoding by striatal ensembles. ]]> https://biorxiv.org/cgi/content/short/2021.03.12.435177v1?rss=1" Bruce, R. Weber, M. Volkman, R. Oya, M. Emmons, E. Kim, Y. Narayanan, N. 2021-03-12 doi:10.1101/2021.03.12.435177 Cold Spring Harbor Laboratory Press 2021-03-12 <![CDATA[ Structure in motion: visual motion perception as online hierarchical inference ]]> https://biorxiv.org/cgi/content/short/2021.10.21.465346v1?rss=1" Bill, J. Gershman, S. J. Drugowitsch, J. 2021-10-23 doi:10.1101/2021.10.21.465346 Cold Spring Harbor Laboratory Press 2021-10-23 <![CDATA[ Coordinated drift of receptive fields during noisy representation learning ]]> https://biorxiv.org/cgi/content/short/2021.08.30.458264v1?rss=1" Qin, S. Farashahi, S. Lipshutz, D. Sengupta, A. M. Chklovskii, D. B. Pehlevan, C. 2021-09-01 doi:10.1101/2021.08.30.458264 Cold Spring Harbor Laboratory Press 2021-09-01 <![CDATA[ Human anterolateral entorhinal cortex volumes are associated with preclinical cognitive decline ]]> https://biorxiv.org/cgi/content/short/080374v1?rss=1" Rosanna K Olsen Lok-Kin Yeung Alix Noly-Gandon Maria C D'Angelo Arber Kacollja Victoria Smith Jennifer D Ryan Morgan D Barense 2016-10-12 doi:10.1101/080374 Cold Spring Harbor Laboratory Press 2016-10-12 <![CDATA[ Where is all the nonlinearity: flexible nonlinear modeling of behaviorally relevant neural dynamics using recurrent neural networks ]]> https://biorxiv.org/cgi/content/short/2021.09.03.458628v1?rss=1" Sani, O. G. Pesaran, B. Shanechi, M. M. 2021-09-06 doi:10.1101/2021.09.03.458628 Cold Spring Harbor Laboratory Press 2021-09-06 <![CDATA[ Bump attractor dynamics underlying stimulus integration in perceptual estimation tasks ]]> https://biorxiv.org/cgi/content/short/2021.03.15.434192v1?rss=1" Esnaola-Acebes, J. M. Roxin, A. Wimmer, K. 2021-03-16 doi:10.1101/2021.03.15.434192 Cold Spring Harbor Laboratory Press 2021-03-16 <![CDATA[ Stretching and squeezing of neuronal log firing rate distribution by psychedelic and intrinsic brain state transitions ]]> https://biorxiv.org/cgi/content/short/2021.08.22.457198v1?rss=1" Dearnley, B. Dervinis, M. Shaw, M. Okun, M. 2021-08-23 doi:10.1101/2021.08.22.457198 Cold Spring Harbor Laboratory Press 2021-08-23 <![CDATA[ Going Beyond the Point Neuron: Active Dendrites and Sparse Representations for Continual Learning ]]> https://biorxiv.org/cgi/content/short/2021.10.25.465651v1?rss=1" Grewal, K. Forest, J. Cohen, B. Ahmad, S. 2021-10-26 doi:10.1101/2021.10.25.465651 Cold Spring Harbor Laboratory Press 2021-10-26 <![CDATA[ A reservoir of timescales in random neural networks ]]> https://biorxiv.org/cgi/content/short/2021.10.11.463861v1?rss=1" Stern, M. Istrate, N. Mazzucato, L. 2021-10-12 doi:10.1101/2021.10.11.463861 Cold Spring Harbor Laboratory Press 2021-10-12 <![CDATA[ Temporal learning among prefrontal and striatal ensembles ]]> https://biorxiv.org/cgi/content/short/2020.02.28.970053v1?rss=1" Emmons, E. B. Chiuffa Tunes, G. Choi, J. Bruce, R. A. Weber, M. Kim, Y. Narayanan, N. 2020-03-02 doi:10.1101/2020.02.28.970053 Cold Spring Harbor Laboratory Press 2020-03-02 <![CDATA[ Informative neural representations of unseen objects during higher-order processing in human brains and deep artificial networks ]]> https://biorxiv.org/cgi/content/short/2021.01.12.426428v1?rss=1" Mei, N. Santana, R. Soto, D. 2021-01-14 doi:10.1101/2021.01.12.426428 Cold Spring Harbor Laboratory Press 2021-01-14 <![CDATA[ A geometry of spike sequences: Fast, unsupervised discovery of high-dimensional neural spiking patterns based on optimal transport theory ]]> https://biorxiv.org/cgi/content/short/2020.06.03.131573v1?rss=1" Sotomayor-Gomez, B. Battaglia, F. P. Vinck, M. 2020-06-04 doi:10.1101/2020.06.03.131573 Cold Spring Harbor Laboratory Press 2020-06-04 <![CDATA[ A delay in sampling information from temporally autocorrelated visual stimuli ]]> https://biorxiv.org/cgi/content/short/656850v1?rss=1" Callahan-Flintoft, C. Holcombe, A. O. Wyble, B. 2019-05-31 doi:10.1101/656850 Cold Spring Harbor Laboratory Press 2019-05-31 <![CDATA[ Neuronal cascades shape whole-brain functional dynamics at rest ]]> https://biorxiv.org/cgi/content/short/2020.12.25.424385v1?rss=1" Rabuffo, G. Fousek, J. Bernard, C. Jirsa, V. 2020-12-26 doi:10.1101/2020.12.25.424385 Cold Spring Harbor Laboratory Press 2020-12-26 <![CDATA[ Influence of Rule and Reward-based Strategies on Inferences of Serial Order by Monkeys ]]> https://biorxiv.org/cgi/content/short/2021.09.16.459819v1?rss=1" Ferhat, A.-T. Jensen, G. Terrace, H. S. Ferrera, V. P. 2021-09-17 doi:10.1101/2021.09.16.459819 Cold Spring Harbor Laboratory Press 2021-09-17 <![CDATA[ Similar cognitive processing synchronizes brains, hearts, and eyes ]]> https://biorxiv.org/cgi/content/short/2021.09.16.460722v1?rss=1" Madsen, J. Parra, L. C. 2021-09-20 doi:10.1101/2021.09.16.460722 Cold Spring Harbor Laboratory Press 2021-09-20 <![CDATA[ Learning brain dynamics for decoding and predicting individual differences ]]> https://biorxiv.org/cgi/content/short/2021.03.27.437315v1?rss=1" Pessoa, L. Limbachia, C. Misra, J. Surampudi, S. G. Venkatesh, M. Jaja, J. 2021-03-27 doi:10.1101/2021.03.27.437315 Cold Spring Harbor Laboratory Press 2021-03-27 <![CDATA[ Brain-inspired spiking neural network controller for a neurorobotic whisker system ]]> https://biorxiv.org/cgi/content/short/2021.10.26.465919v1?rss=1" Antonietti, A. Geminiani, A. Negri, E. D'Angelo, E. U. Casellato, C. Pedrocchi, A. 2021-10-28 doi:10.1101/2021.10.26.465919 Cold Spring Harbor Laboratory Press 2021-10-28 <![CDATA[ Explaining heterogeneity in medial entorhinal cortex with task-driven neural networks ]]> https://biorxiv.org/cgi/content/short/2021.10.30.466617v1?rss=1" Nayebi, A. Attinger, A. Campbell, M. G. Hardcastle, K. Low, I. I. C. Mallory, C. S. Mel, G. C. Sorscher, B. Williams, A. H. Ganguli, S. Giocomo, L. M. Yamins, D. L. K. 2021-11-02 doi:10.1101/2021.10.30.466617 Cold Spring Harbor Laboratory Press 2021-11-02 <![CDATA[ Weak Coupling Between Spontaneous Local Cortical Activity State Switches Under Anesthesia Leads to Strongly Correlated Global Cortical States ]]> https://biorxiv.org/cgi/content/short/2021.11.07.467591v1?rss=1" Blackwood, E. B. Shortal, B. P. Proekt, A. 2021-11-08 doi:10.1101/2021.11.07.467591 Cold Spring Harbor Laboratory Press 2021-11-08 <![CDATA[ Integrating Task-Based Functional MRI Across Tasks Markedly Boosts Prediction and Reliability of Brain-Cognition Relationship ]]> https://biorxiv.org/cgi/content/short/2021.10.31.466638v1?rss=1" Tetereva, A. Li, J. Deng, J. Stringaris, A. Pat, N. 2021-11-02 doi:10.1101/2021.10.31.466638 Cold Spring Harbor Laboratory Press 2021-11-02 <![CDATA[ Sequence anticipation and STDP emerge from a voltage-based predictive learning rule ]]> https://biorxiv.org/cgi/content/short/2021.10.31.466667v1?rss=1" Saponati, M. Vinck, M. 2021-11-03 doi:10.1101/2021.10.31.466667 Cold Spring Harbor Laboratory Press 2021-11-03 <![CDATA[ Multiscale and extended retrieval of associative memory structures in a cortical model of local-global inhibition balance ]]> https://biorxiv.org/cgi/content/short/2021.11.30.470555v1?rss=1" Burns, T. F. Haga, T. F. Fukai, T. 2021-12-01 doi:10.1101/2021.11.30.470555 Cold Spring Harbor Laboratory Press 2021-12-01 <![CDATA[ A large-scale neural network training framework for generalized estimation of single-trial population dynamics ]]> https://biorxiv.org/cgi/content/short/2021.01.13.426570v1?rss=1" Keshtkaran, M. R. Sedler, A. R. Chowdhury, R. H. Tandon, R. Basrai, D. Nguyen, S. L. Sohn, H. Jazayeri, M. Miller, L. E. Pandarinath, C. 2021-01-15 doi:10.1101/2021.01.13.426570 Cold Spring Harbor Laboratory Press 2021-01-15 <![CDATA[ A deep learning framework for inference of single-trial neural population activity from calcium imaging with sub-frame temporal resolution ]]> https://biorxiv.org/cgi/content/short/2021.11.21.469441v1?rss=1" Zhu, F. Grier, H. A. Tandon, R. Cai, C. Giovannucci, A. Kaufman, M. T. Pandarinath, C. 2021-11-21 doi:10.1101/2021.11.21.469441 Cold Spring Harbor Laboratory Press 2021-11-21 <![CDATA[ PsychRNN: An Accessible and Flexible Python Package for Training Recurrent Neural Network Models on Cognitive Tasks ]]> https://biorxiv.org/cgi/content/short/2020.09.30.321752v1?rss=1" View larger version (25K): org.highwire.dtl.DTLVardef@1541513org.highwire.dtl.DTLVardef@133c86borg.highwire.dtl.DTLVardef@aaf099org.highwire.dtl.DTLVardef@99d55b_HPS_FORMAT_FIGEXP M_FIG Example workflow for using PsychRNN. First, the task of interest is defined, and a recurrent neural network model is trained to perform the task, optionally with neurobiologically informed constraints on the network. After the network is trained, the researchers can investigate network properties including the synaptic connectivity patterns and the dynamics of neural population activity during task execution, and other studies, e.g. those on perturbations, can be explored. The dotted line shows the possible repetition of this cycle with one network, which allows investigation of training effects of task shaping, or curriculum learning, for closed-loop training of the network on a progression of tasks. C_FIG Significance StatementArtificial recurrent neural network (RNN) modeling is of increasing interest within computational, systems, and cognitive neuroscience, yet its proliferation as a computational tool within the field has been limited due to technical barriers in use of specialized deep-learning software. PsychRNN provides an accessible, flexible, and powerful framework for training RNN models on cognitive tasks. Users can define tasks and train models using the Python-based interface which enables RNN modeling studies without requiring user knowledge of deep learning software. PsychRNNs modular structure facilitates task specification and incorporation of neurobiological constraints, and supports extensibility for users with deep learning expertise. PsychRNNs framework for RNN modeling will increase accessibility and reproducibility of this approach across neuroscience subfields. ]]> Ehrlich, D. B. Stone, J. T. Brandfonbrener, D. Atanasov, A. Murray, J. D. 2020-10-01 doi:10.1101/2020.09.30.321752 Cold Spring Harbor Laboratory Press 2020-10-01 <![CDATA[ Parieto-frontal Oscillations Show Hand Specific Interactions with Top-Down Movement Plans ]]> https://biorxiv.org/cgi/content/short/2022.05.19.492685v1?rss=1" Blohm, G. Cheyne, D. O. Crawford, J. D. 2022-05-20 doi:10.1101/2022.05.19.492685 Cold Spring Harbor Laboratory Press 2022-05-20 <![CDATA[ A deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging data ]]> https://biorxiv.org/cgi/content/short/2020.08.31.272450v1?rss=1" 35 hours from 298 neurons. We then developed a novel algorithm for spike inference (CASCADE) that is based on supervised deep networks, takes advantage of the ground truth database, infers absolute spike rates, and outperforms existing model-based algorithms. To optimize performance for unseen imaging data, CASCADE retrains itself by resampling ground truth data to match the respective sampling rate and noise level. As a consequence, no parameters need to be adjusted by the user. To facilitate routine application of CASCADE we developed systematic performance assessments for unseen data, we openly release all resources, and we provide a user-friendly cloud-based implementation. ]]> Rupprecht, P. Carta, S. Hoffmann, A. Echizen, M. Kitamura, K. Helmchen, F. Friedrich, R. W. 2020-09-01 doi:10.1101/2020.08.31.272450 Cold Spring Harbor Laboratory Press 2020-09-01 <![CDATA[ Visual stimulus-specific habituation of innate defensive behaviour in mice ]]> https://biorxiv.org/cgi/content/short/2020.05.11.087825v1?rss=1" Tafreshiha, A. Van den Burg, S. A. Smits, K. Blömer, L. A. Heimel, J. A. 2020-05-13 doi:10.1101/2020.05.11.087825 Cold Spring Harbor Laboratory Press 2020-05-13 <![CDATA[ Transient beta activity and connectivity during sustained motor behaviour ]]> https://biorxiv.org/cgi/content/short/2021.03.02.433514v1?rss=1" Echeverria-Altuna, I. Quinn, A. J. Zokaei, N. Woolrich, M. W. Nobre, A. C. van Ede, F. 2021-03-02 doi:10.1101/2021.03.02.433514 Cold Spring Harbor Laboratory Press 2021-03-02 <![CDATA[ Animal-to-Animal Variability in Hippocampal Remapping ]]> https://biorxiv.org/cgi/content/short/2020.12.30.424873v1?rss=1" Nilchian, P. Wilson, M. A. Sanders, H. 2021-01-02 doi:10.1101/2020.12.30.424873 Cold Spring Harbor Laboratory Press 2021-01-02 <![CDATA[ Can we conjointly record direct interactions between neurons in vivo in anatomically-connected brain areas? Probabilistic analyses and further implications. ]]> https://biorxiv.org/cgi/content/short/2020.12.07.415125v1?rss=1" Martin, S. K. Aggleton, J. O'Mara, S. 2020-12-08 doi:10.1101/2020.12.07.415125 Cold Spring Harbor Laboratory Press 2020-12-08 <![CDATA[ Neural dynamics of semantic categorization in semantic variant of Primary Progressive Aphasia. ]]> https://biorxiv.org/cgi/content/short/2020.10.07.329698v1?rss=1" Borghesani, V. Dale, C. L. Lukic, S. Hinkley, L. B. N. Lauricella, M. Shwe, W. Miziuri, D. Honma, S. Miller, Z. Miller, B. L. Houde, J. Gorno-Tempini, M. L. Nagarajan, S. 2020-10-09 doi:10.1101/2020.10.07.329698 Cold Spring Harbor Laboratory Press 2020-10-09 <![CDATA[ Taking the sub-lexical route: brain dynamics of reading in the semantic variant of Primary Progressive Aphasia. ]]> https://biorxiv.org/cgi/content/short/847798v1?rss=1" Borghesani, V. Hinkley, L. B. Ranasinghe, K. G. Thompson, M. Shwe, W. Mizuiri, D. Lauricella, M. Europa, E. Honma, S. Miller, Z. Miller, B. L. Vossel, K. Houde, J. F. Gorno-Tempini, M. L. Nagarajan, S. 2019-11-21 doi:10.1101/847798 Cold Spring Harbor Laboratory Press 2019-11-21 <![CDATA[ Remembrance of things practiced: A two-pathway circuit for sequential learning ]]> https://biorxiv.org/cgi/content/short/797548v1?rss=1" Murray, J. M. Escola, S. 2019-10-08 doi:10.1101/797548 Cold Spring Harbor Laboratory Press 2019-10-08 <![CDATA[ NBR: Network-based R-statistics for (unbalanced) longitudinal samples ]]> https://biorxiv.org/cgi/content/short/2020.11.07.373019v1?rss=1" Gracia-Tabuenca, Z. Alcauter, S. 2020-11-08 doi:10.1101/2020.11.07.373019 Cold Spring Harbor Laboratory Press 2020-11-08 <![CDATA[ Modeling behaviorally relevant neural dynamics enabled by preferential subspace identification (PSID) ]]> https://biorxiv.org/cgi/content/short/808154v1?rss=1" Sani, O. G. Pesaran, B. Shanechi, M. M. 2019-10-17 doi:10.1101/808154 Cold Spring Harbor Laboratory Press 2019-10-17 <![CDATA[ Bisected graph matching improves automated pairing of bilaterally homologous neurons from connectomes ]]> https://biorxiv.org/cgi/content/short/2022.05.19.492713v1?rss=1" Pedigo, B. D. Winding, M. Priebe, C. E. Vogelstein, J. T. 2022-05-20 doi:10.1101/2022.05.19.492713 Cold Spring Harbor Laboratory Press 2022-05-20 <![CDATA[ Predicting the principal components of cortical morphological variables ]]> https://biorxiv.org/cgi/content/short/2022.07.07.499214v1?rss=1" Mello, V. B. B. de Moraes, F. H. Mota, B. 2022-07-08 doi:10.1101/2022.07.07.499214 Cold Spring Harbor Laboratory Press 2022-07-08 <![CDATA[ DataJoint: managing big scientific data using MATLAB or Python ]]> https://biorxiv.org/cgi/content/short/031658v1?rss=1" Dimitri Yatsenko Jacob Reimer Alexander S Ecker Edgar Y Walker Fabian Sinz Philipp Berens Andreas Hoenselaar Ronald James Cotton Athanassios S. Siapas Andreas S. Tolias 2015-11-14 doi:10.1101/031658 Cold Spring Harbor Laboratory Press 2015-11-14 <![CDATA[ DataJoint Elements: Data Workflows for Neurophysiology ]]> https://biorxiv.org/cgi/content/short/2021.03.30.437358v1?rss=1" Yatsenko, D. Nguyen, T. Shen, S. Gunalan, K. Turner, C. A. Guzman, R. Sasaki, M. Sitonic, D. Reimer, J. Walker, E. Y. Tolias, A. 2021-03-30 doi:10.1101/2021.03.30.437358 Cold Spring Harbor Laboratory Press 2021-03-30 <![CDATA[ Mooney Face Image Processing in Deep Convolutional Neural Networks Compared to Humans ]]> https://biorxiv.org/cgi/content/short/2022.03.21.485240v1?rss=1" Zeman, A. Leers, T. Op de Beeck, H. 2022-03-23 doi:10.1101/2022.03.21.485240 Cold Spring Harbor Laboratory Press 2022-03-23 <![CDATA[ Assessing the influence of local neural activity on global connectivity fluctuations: Application to human intracranial EEG during a cognitive task ]]> https://biorxiv.org/cgi/content/short/2021.06.25.449912v1?rss=1" Vila-Vidal, M. Khawaja, M. Carreno, M. Roldan, P. Rumia, J. Donaire, A. Deco, G. Tauste Campo, A. 2021-06-26 doi:10.1101/2021.06.25.449912 Cold Spring Harbor Laboratory Press 2021-06-26 <![CDATA[ AVATAR: AI Vision Analysis for Three-dimensional Action in Real-time ]]> https://biorxiv.org/cgi/content/short/2021.12.31.474634v1?rss=1" Kim, D. Kim, D.-G. Shin, A. Jeong, Y.-C. Park, S. 2022-01-02 doi:10.1101/2021.12.31.474634 Cold Spring Harbor Laboratory Press 2022-01-02 <![CDATA[ Idiosyncratic relation between human brain activity and behavior ]]> https://biorxiv.org/cgi/content/short/2022.08.01.502338v1?rss=1" Nakuci, J. Yeon, J. Xue, K. Kim, J.-H. Kim, S.-P. Rahnev, D. 2022-08-02 doi:10.1101/2022.08.01.502338 Cold Spring Harbor Laboratory Press 2022-08-02 <![CDATA[ Information theory-based approach towards studying anti-coincidence detection via graded amplitude dendritic action potentials. ]]> https://biorxiv.org/cgi/content/short/2021.08.09.455769v1?rss=1" Sinha, V. 2021-08-10 doi:10.1101/2021.08.09.455769 Cold Spring Harbor Laboratory Press 2021-08-10 <![CDATA[ Complementary population codes in the dorsal and ventral hippocampus during associative learning ]]> https://biorxiv.org/cgi/content/short/2021.11.16.468862v1?rss=1" Biane, J. S. Ladow, M. A. Stefanini, F. Boddu, S. P. Fan, A. Hassan, S. Dundar, N. Apodaca-Montano, D. L. Woods, N. I. Khierbek, M. A. 2021-11-18 doi:10.1101/2021.11.16.468862 Cold Spring Harbor Laboratory Press 2021-11-18 <![CDATA[ Population geometry enables fast sampling in spiking neural networks ]]> https://biorxiv.org/cgi/content/short/2022.06.03.494680v1?rss=1" Masset, P. Zavatone-Veth, J. A. Connor, J. P. Murthy, V. N. Pehlevan, C. 2022-06-05 doi:10.1101/2022.06.03.494680 Cold Spring Harbor Laboratory Press 2022-06-05 <![CDATA[ RTNet: A neural network that exhibits the signatures of human perceptual decision making ]]> https://biorxiv.org/cgi/content/short/2022.08.23.505015v1?rss=1" Rafiei, F. Rahnev, D. 2022-08-25 doi:10.1101/2022.08.23.505015 Cold Spring Harbor Laboratory Press 2022-08-25 <![CDATA[ Spatial and temporal autocorrelation weave human brain networks ]]> https://biorxiv.org/cgi/content/short/2021.06.01.446561v1?rss=1" Shinn, M. Hu, A. Turner, L. Noble, S. Achard, S. Anticevic, A. Scheinost, D. Constable, R. T. Lee, D. Bullmore, E. T. Murray, J. D. 2021-06-01 doi:10.1101/2021.06.01.446561 Cold Spring Harbor Laboratory Press 2021-06-01 <![CDATA[ Flexible Intentions in the Posterior Parietal Cortex: An Active Inference Theory ]]> https://biorxiv.org/cgi/content/short/2022.04.08.487597v1?rss=1" Priorelli, M. Stoianov, I. P. 2022-04-10 doi:10.1101/2022.04.08.487597 Cold Spring Harbor Laboratory Press 2022-04-10 <![CDATA[ Humans account for cognitive costs when finding shortcuts: An information-theoretic analysis of navigation ]]> https://biorxiv.org/cgi/content/short/2022.08.06.503020v1?rss=1" Lancia, G. L. Eluchans, M. D'Alessandro, M. Spiers, H. J. Pezzulo, G. 2022-08-06 doi:10.1101/2022.08.06.503020 Cold Spring Harbor Laboratory Press 2022-08-06 <![CDATA[ Off-manifold coding in visual cortex revealed by sleep ]]> https://biorxiv.org/cgi/content/short/2022.06.10.495710v1?rss=1" de Oliveira, E. F. Kim, S. Qiu, T. S. Peyrache, A. Batista-Brito, R. Sjulson, L. 2022-06-13 doi:10.1101/2022.06.10.495710 Cold Spring Harbor Laboratory Press 2022-06-13 <![CDATA[ Parallel planning through an optimal neural subspace in motor cortex ]]> https://biorxiv.org/cgi/content/short/2022.07.09.499417v1?rss=1" Meirhaeghe, N. Riehle, A. Brochier, T. 2022-07-10 doi:10.1101/2022.07.09.499417 Cold Spring Harbor Laboratory Press 2022-07-10 <![CDATA[ Direct Speech Reconstruction from Sensorimotor Brain Activity with Optimized Deep Learning Models ]]> https://biorxiv.org/cgi/content/short/2022.08.02.502503v1?rss=1" Berezutskaya, J. Freudenburg, Z. V. Vansteensel, M. J. Aarnoutse, E. J. Ramsey, N. F. van Gerven, M. A. J. 2022-08-04 doi:10.1101/2022.08.02.502503 Cold Spring Harbor Laboratory Press 2022-08-04 <![CDATA[ A synergistic core for human brain evolution and cognition ]]> https://biorxiv.org/cgi/content/short/2020.09.22.308981v1?rss=1" Luppi, A. I. Mediano, P. A. M. Rosas, F. E. Holland, N. Fryer, T. D. O'Brien, J. T. Rowe, J. B. Menon, D. K. Bor, D. Stamatakis, E. A. 2020-09-22 doi:10.1101/2020.09.22.308981 Cold Spring Harbor Laboratory Press 2020-09-22 <![CDATA[ Coupling of pupil- and neuronal population dynamics reveals diverse influences of arousal on cortical processing ]]> https://biorxiv.org/cgi/content/short/2021.06.25.449734v1?rss=1" 64 Hz) activity in mid-frontal regions, followed by monotonic and inverted-U relationships with intermediate frequency-range activity (8-32 Hz) in occipito-parietal regions. Pupil-linked arousal also coincided with widespread changes in the structure of the aperiodic component of cortical population activity, indicative of changes in the excitation-inhibition balance in underlying microcircuits. Our results provide a novel basis for studying the arousal modulation of cognitive computations in cortical circuits. ]]> Pfeffer, T. Keitel, C. Kluger, D. S. Keitel, A. Russmann, A. Thut, G. Donner, T. H. Gross, J. 2021-06-25 doi:10.1101/2021.06.25.449734 Cold Spring Harbor Laboratory Press 2021-06-25 <![CDATA[ Confidence of probabilistic predictions modulates the cortical response to pain ]]> https://biorxiv.org/cgi/content/short/2022.08.11.503296v1?rss=1" Mulders, D. Seymour, B. Mouraux, A. Mancini, F. 2022-08-15 doi:10.1101/2022.08.11.503296 Cold Spring Harbor Laboratory Press 2022-08-15 <![CDATA[ Irregular optogenetic stimulation waveforms can induce naturalistic patterns of hippocampal spectral activity ]]> https://biorxiv.org/cgi/content/short/2022.09.21.508935v1?rss=1" Cole, E. R. Eggers, T. E. Weiss, D. Connolly, M. J. Gombolay, M. C. Laxpati, N. G. Gross, R. E. 2022-09-22 doi:10.1101/2022.09.21.508935 Cold Spring Harbor Laboratory Press 2022-09-22