bioRxiv Channel: Mathematical Oncology
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This feed contains articles for bioRxiv Channel "Mathematical Oncology"
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Cell-cell interactions and evolution using evolutionary game theory
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https://biorxiv.org/cgi/content/short/028746v1?rss=1"
David Basanta2015-10-09doi:10.1101/028746Cold Spring Harbor Laboratory Press2015-10-09
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Simulating multi-substrate diffusive transport in 3-D tissues with BioFVM
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https://biorxiv.org/cgi/content/short/035709v1?rss=1"
Samuel H FriedmanAhmadreza GhaffarizadehPaul Macklin2015-12-30doi:10.1101/035709Cold Spring Harbor Laboratory Press2015-12-30
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Agent-based simulation of large tumors in 3-D microenvironments
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https://biorxiv.org/cgi/content/short/035733v1?rss=1"
Ahmadreza GhaffarizadehSamuel H FriedmanPaul Macklin2015-12-30doi:10.1101/035733Cold Spring Harbor Laboratory Press2015-12-30
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The role of contact inhibition in intratumoral heterogeneity: An off-lattice individual based model
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https://biorxiv.org/cgi/content/short/036467v1?rss=1"
Jill GallaherAlexander Anderson2016-01-11doi:10.1101/036467Cold Spring Harbor Laboratory Press2016-01-11
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Estimating cell cycle model parameters using systems identification
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https://biorxiv.org/cgi/content/short/035766v1?rss=1"
Edwin Francisco Juarez RosalesAhmadreza GhaffarizadehSamuel H FriedmanEdmond JonckheerePaul Macklin2015-12-31doi:10.1101/035766Cold Spring Harbor Laboratory Press2015-12-31
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Hybrid Systems Modeling for (Cancer) Systems Biology
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https://biorxiv.org/cgi/content/short/035022v1?rss=1"
Roel I.J. DobbeClaire J. Tomlin2015-12-23doi:10.1101/035022Cold Spring Harbor Laboratory Press2015-12-23
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Physics-based multiscale mass transport model in drug delivery and tumor microenvironment
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https://biorxiv.org/cgi/content/short/031252v1?rss=1"
Arturas ZiemysMilos KojicMauro Ferrari2015-11-10doi:10.1101/031252Cold Spring Harbor Laboratory Press2015-11-10
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Agent based models to investigate cooperation between cancer cells
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https://biorxiv.org/cgi/content/short/031070v1?rss=1"
Joao XavierWilliam Chang2015-11-09doi:10.1101/031070Cold Spring Harbor Laboratory Press2015-11-09
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A Bayesian network approach for modeling mixed features in TCGA ovarian cancer data
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https://biorxiv.org/cgi/content/short/033332v1?rss=1"
Qingyang ZhangJi-Ping Wang2015-11-30doi:10.1101/033332Cold Spring Harbor Laboratory Press2015-11-30
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Stochastic Models for Population Dynamics
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https://biorxiv.org/cgi/content/short/031237v1?rss=1"
Sean Sun2015-12-03doi:10.1101/031237Cold Spring Harbor Laboratory Press2015-12-03
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Micro-Pharmacodynamics: Bridging In Vitro and In Vivo Experimental Scales in Testing Drug Efficacy and Resistance
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https://biorxiv.org/cgi/content/short/031294v1?rss=1"
Katarzyna A Rejniak2015-11-11doi:10.1101/031294Cold Spring Harbor Laboratory Press2015-11-11
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Vectorization techniques for efficient agent-based model simulations of tumor growth
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https://biorxiv.org/cgi/content/short/032086v1?rss=1"
Jan PoleszczukHeiko Enderling2015-11-17doi:10.1101/032086Cold Spring Harbor Laboratory Press2015-11-17
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Integrating experimental data to calibrate quantitative cancer models
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https://biorxiv.org/cgi/content/short/032102v1?rss=1"
Heiko Enderling2015-11-17doi:10.1101/032102Cold Spring Harbor Laboratory Press2015-11-17
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Overview: Modeling Heterogeneous Tumor Tissue as a Multiphase Material
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https://biorxiv.org/cgi/content/short/031534v1?rss=1"
Hermann B Frieboes2015-11-12doi:10.1101/031534Cold Spring Harbor Laboratory Press2015-11-12
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Modeling Transitions between Responsive and Resistant States in Breast Cancer with Application to Therapy Optimization
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https://biorxiv.org/cgi/content/short/031245v1?rss=1"
Chun ChenJohn J. TysonWilliam Baumann2015-11-10doi:10.1101/031245Cold Spring Harbor Laboratory Press2015-11-10
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Precision Medicine in the Clinic: Personalizing a Model of Glioblastoma Through Parameterization
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https://biorxiv.org/cgi/content/short/037424v1?rss=1"
Andrea Hawkins-DaarudKristin R. Swanson2016-01-22doi:10.1101/037424Cold Spring Harbor Laboratory Press2016-01-22
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Non-linear tumor-immune interactions arising from spatial metabolic heterogeneity
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https://biorxiv.org/cgi/content/short/038273v1?rss=1"
Mark Robertson-TessiRobert J GilliesRobert A GatenbyAlexander RA Anderson2016-01-29doi:10.1101/038273Cold Spring Harbor Laboratory Press2016-01-29
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Dissecting resistance mechanisms in melanoma combination therapy
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https://biorxiv.org/cgi/content/short/041855v1?rss=1"
Eunjung KimAlexander Anderson2016-02-29doi:10.1101/041855Cold Spring Harbor Laboratory Press2016-02-29
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Reaction-Diffusion Model of PDGF-driven Recruitment in Experimental Glioblastoma
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https://biorxiv.org/cgi/content/short/038471v1?rss=1"
Susan Christine MasseyKristin Swanson2016-02-04doi:10.1101/038471Cold Spring Harbor Laboratory Press2016-02-04
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Hybrid Discrete-Continuum Cellular Automaton (HCA) model of Prostate to Bone Metastasis
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https://biorxiv.org/cgi/content/short/043620v1?rss=1"
Arturo AraujoDavid Bastanta2016-03-15doi:10.1101/043620Cold Spring Harbor Laboratory Press2016-03-15
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Mining Large Heterogeneous Cancer Data Sets Using Boolean Implications
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https://biorxiv.org/cgi/content/short/045021v1?rss=1"
Subarna SinhaDavid L Dill2016-03-21doi:10.1101/045021Cold Spring Harbor Laboratory Press2016-03-21
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Game theoretic methods in population dynamics
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https://biorxiv.org/cgi/content/short/056341v1?rss=1"
David Liao2016-05-31doi:10.1101/056341Cold Spring Harbor Laboratory Press2016-05-31
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Using Ordinary Differential Equations to Explore Cancer-Immune Dynamics and Tumor Dormancy
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https://biorxiv.org/cgi/content/short/049874v1?rss=1"
Kathleen WilkiePhilip HahnfeldtLynn Hlatky2016-04-22doi:10.1101/049874Cold Spring Harbor Laboratory Press2016-04-22
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Long Range Force Transmission in Fibrous Matrices Enabled by Tension-Driven Alignment of Fibers
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https://biorxiv.org/cgi/content/short/048579v1?rss=1"
Hailong WangAbhilash ASChristopher S ChenRebecca G WellsVivek B Shenoy2016-04-13doi:10.1101/048579Cold Spring Harbor Laboratory Press2016-04-13
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Multiscale Modeling of Cancer
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https://biorxiv.org/cgi/content/short/033977v1?rss=1"
Kerri-Ann NortonMeghan M McCabe PryorAleksander S Popel2015-12-08doi:10.1101/033977Cold Spring Harbor Laboratory Press2015-12-08
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Network-based Computational Drug Combination Prediction
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https://biorxiv.org/cgi/content/short/049015v1?rss=1"
Fuhai LiLei HuangJianting ShengStephen TC Wong2016-04-16doi:10.1101/049015Cold Spring Harbor Laboratory Press2016-04-16
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Automated population identification and sorting algorithms for high-dimensional single-cell data
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https://biorxiv.org/cgi/content/short/046664v1?rss=1"
Benedict AnchangSylvia Plevritis2016-03-31doi:10.1101/046664Cold Spring Harbor Laboratory Press2016-03-31
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Mathematical Methods for Modeling Chemical Reaction Networks
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https://biorxiv.org/cgi/content/short/070326v1?rss=1"
Justin CardenCasian PanteaGheorge CraciunRaghu MachirajuParag Mallick2016-08-18doi:10.1101/070326Cold Spring Harbor Laboratory Press2016-08-18
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Ordinary Differential Equations in Cancer Biology
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https://biorxiv.org/cgi/content/short/071134v1?rss=1"
Margaret P ChapmanClaire J. Tomlin2016-08-23doi:10.1101/071134Cold Spring Harbor Laboratory Press2016-08-23
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Network Identification Methods
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https://biorxiv.org/cgi/content/short/071217v1?rss=1"
Young Hwan ChangClaire Tomlin2016-08-23doi:10.1101/071217Cold Spring Harbor Laboratory Press2016-08-23
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Open source tools and standardized data in cancer systems biology
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https://biorxiv.org/cgi/content/short/244319v1?rss=1"
Macklin, P.Friedman, S. H.MultiCellDS Project,2018-01-07doi:10.1101/244319Cold Spring Harbor Laboratory Press2018-01-07
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Assessment of patient-specific efficacy of chemo- and targeted-therapies: a micropharmacology approach
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https://biorxiv.org/cgi/content/short/236653v1?rss=1"
Karolak, A. A.Huffstutler, B.Khan, Z.Rejniak, K. A.2017-12-20doi:10.1101/236653Cold Spring Harbor Laboratory Press2017-12-20
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Hybrid approach for parameter estimation in agent-based models
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https://biorxiv.org/cgi/content/short/175661v1?rss=1"
Gallaher, J.Hawkins-Daarud, A.Massey, S. C.Swanson, K.Anderson, A.2017-08-13doi:10.1101/175661Cold Spring Harbor Laboratory Press2017-08-13
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Days Gained: A Simulation-Based, Response Metric in the Assessment of Glioblastoma
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https://biorxiv.org/cgi/content/short/209056v1?rss=1"
De Leon, G.Singleton, K. W.Swanson, K. R.2018-01-07doi:10.1101/209056Cold Spring Harbor Laboratory Press2018-01-07
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Competitive release in tumors
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https://biorxiv.org/cgi/content/short/263335v1?rss=1"
Ma, Y.West, J.Newton, P. K.2018-02-10doi:10.1101/263335Cold Spring Harbor Laboratory Press2018-02-10
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Optimizing chemo-scheduling based on tumor growth rates
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https://biorxiv.org/cgi/content/short/263327v1?rss=1"
West, J.Newton, P. K.2018-02-10doi:10.1101/263327Cold Spring Harbor Laboratory Press2018-02-10
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Markov chain models of cancer metastasis
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https://biorxiv.org/cgi/content/short/263350v1?rss=1"
Mason, J.Newton, P. K.2018-02-13doi:10.1101/263350Cold Spring Harbor Laboratory Press2018-02-13
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A new paradigm for personalized cancer screening
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https://biorxiv.org/cgi/content/short/265959v1?rss=1"
Walker, R.Enderling, H.2018-02-15doi:10.1101/265959Cold Spring Harbor Laboratory Press2018-02-15
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Mathematical modelling of molecular heterogeneity identifies novel markers and subpopulations in complex tumors
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https://biorxiv.org/cgi/content/short/283903v1?rss=1"
Chen, L.Wang, N.Clarke, R.Zhang, Z.Wang, Y.2018-03-17doi:10.1101/283903Cold Spring Harbor Laboratory Press2018-03-17
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Cryptsim: Modeling the evolutionary dynamics of the progression of Barrett’s esophagus to esophageal adenocarcinoma
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https://biorxiv.org/cgi/content/short/323485v1?rss=1"
Mallo, D.Kostadinov, R.Cisneros, L.Kuhner, M. K.Maley, C. C.2018-05-16doi:10.1101/323485Cold Spring Harbor Laboratory Press2018-05-16
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Using neural networks to bridge scales in cancer: Mapping signaling pathways to phenotypes
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https://biorxiv.org/cgi/content/short/324038v1?rss=1"
Kim, E.Gerlee, P.Anderson, A.2018-05-16doi:10.1101/324038Cold Spring Harbor Laboratory Press2018-05-16
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Constructing predictive cancer systems biology models
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https://biorxiv.org/cgi/content/short/360800v1?rss=1"
Rohrs, J. A.Makaryan, S. Z.Finley, S. D.2018-07-04doi:10.1101/360800Cold Spring Harbor Laboratory Press2018-07-04
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Modeling non-genetic dynamics of cancer cell states measured by single-cell analysis: Uncovering bifurcations that explain why treatment either kills a cancer cell or makes it resistant
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https://biorxiv.org/cgi/content/short/574848v1?rss=1"
Huang, S.2019-03-12doi:10.1101/574848Cold Spring Harbor Laboratory Press2019-03-12
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Hypoxia in cancer chemo- and immunotherapy: foe or friend?
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https://biorxiv.org/cgi/content/short/629907v1?rss=1"
Vitos, N.Chen, S.Mathur, S.Chamseddine, I.Rejniak, K. A.2019-05-07doi:10.1101/629907Cold Spring Harbor Laboratory Press2019-05-07
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Predicting patient-specific radiotherapy responses in head and neck cancer to personalize radiation dose fractionation
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https://biorxiv.org/cgi/content/short/630806v1?rss=1"
Enderling, H.Susassee, E.Caudell, J.2019-05-07doi:10.1101/630806Cold Spring Harbor Laboratory Press2019-05-07
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Machine learning versus mechanistic modeling for prediction of metastatic relapse in breast cancer
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https://biorxiv.org/cgi/content/short/634428v1?rss=1"
Nicolo, C.Perier, C.Prague, M.MacGrogan, G.Saut, O.Benzekry, S.2019-05-10doi:10.1101/634428Cold Spring Harbor Laboratory Press2019-05-10
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Heterogeneous multi-scale framework for cancer systems models and clinical applications
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https://biorxiv.org/cgi/content/short/633933v1?rss=1"
Ghosh, A.Radhakrishnan, R.2019-05-16doi:10.1101/633933Cold Spring Harbor Laboratory Press2019-05-16
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Predictive modeling of co-evolving growing populations
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https://biorxiv.org/cgi/content/short/633750v1?rss=1"
Altrock, P. M.Ferrall-Fairbanks, M. C.Kimmel, G. J.2019-05-10doi:10.1101/633750Cold Spring Harbor Laboratory Press2019-05-10
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Quantifying glioblastoma drug penetrance from experimental data
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https://biorxiv.org/cgi/content/short/650184v1?rss=1"
Massey, S. C.Urcuyo, J.Marin, B.-M.Sarkaria, J.Swanson, K. R.2019-05-24doi:10.1101/650184Cold Spring Harbor Laboratory Press2019-05-24
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Modeling the Role of Hypoxia in Glioblastoma Growth and Recurrence Patterns
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https://biorxiv.org/cgi/content/short/691238v1?rss=1"
Curtin, L.Hawkins-Daarud, A.Porter, A.Owen, M. R.van der Zee, K.Swanson, K. R.2019-07-05doi:10.1101/691238Cold Spring Harbor Laboratory Press2019-07-05