bioRxiv Subject Collection: Microbiology
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This feed contains articles for bioRxiv Subject Collection "Microbiology"
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Re-evaluating Reported Pseudolysogeny in Phage T3: T3 and T7 Show Similar Propagation Responses to Nutrient Limitation and Media Switching
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https://www.biorxiv.org/content/10.64898/2026.08.07.743557v1?rss=1
2026-08-10doi:10.64898/2026.08.07.743557Cold Spring Harbor Laboratory2026-08-10
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Isolation, Identification and Antibiogram Assay of Escherichia coli from the Environment of Live Bird Markets in Bangladesh
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https://www.biorxiv.org/content/10.64898/2026.08.09.743748v1?rss=1
2026-08-09doi:10.64898/2026.08.09.743748Cold Spring Harbor Laboratory2026-08-09
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Genome Mining of the Tumor Microbiome Reveals Biosynthetic Diversity and Potential Tumor-modulating Metabolites
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https://www.biorxiv.org/content/10.64898/2026.08.08.743306v1?rss=1
2026-08-09doi:10.64898/2026.08.08.743306Cold Spring Harbor Laboratory2026-08-09
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High occurrence of plasmid-mediated quinolone and ESBL resistance genes among multidrug resistant Escherichia coli from clinical samples in two healthcare facilities in Yaounde, Cameroon.
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https://www.biorxiv.org/content/10.64898/2026.08.07.743442v1?rss=1
2026-08-09doi:10.64898/2026.08.07.743442Cold Spring Harbor Laboratory2026-08-09
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Identification and Antibiogram Assay of Escherichia coli Isolated from Chicken Eggs
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https://www.biorxiv.org/content/10.64898/2026.08.08.743651v1?rss=1
2026-08-09doi:10.64898/2026.08.08.743651Cold Spring Harbor Laboratory2026-08-09
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Requirements for swarming ability by lateral flagella on an agar surface in marine Vibrio cells
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https://www.biorxiv.org/content/10.64898/2026.08.08.743661v1?rss=1
2026-08-09doi:10.64898/2026.08.08.743661Cold Spring Harbor Laboratory2026-08-09
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Structural modeling and experimental validation define the MxA-Thogotovirus nucleoprotein interface that drives restriction and escape
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https://www.biorxiv.org/content/10.64898/2026.08.07.743570v1?rss=1
2026-08-09doi:10.64898/2026.08.07.743570Cold Spring Harbor Laboratory2026-08-09
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Mycobacteriophage D29-mediated lysis improves recovery of mycobacterial genomic DNA from low-biomass samples
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https://www.biorxiv.org/content/10.64898/2026.08.08.743631v1?rss=1
6log10 reduction in CFU, and cell lysis efficiencies calculated as 93.3% (FC) and 96.8% (FM). Molecular quantification (qPCR and ddPCR) indicated that the mycobacteriophage-based lysis achieved between 4- to 7-fold greater gDNA yields in Msm and between 3- to 12-fold greater gDNA yields in Mtb H37Ra compared with the CTAB method. Notably, gDNA extraction efficiencies in both mycobacterial species exceeded 92% in low-biomass samples containing approximately 100, 175 and 320 bacilli. Conclusion: These results demonstrate the utility of the mycobacteriophage D29-based method for improved DNA extraction yields from mycobacteria through direct lysis of individual bacilli, with performance suited to low-biomass samples.
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CRISPR-activation reveals key resistance genes and vulnerabilities of copy number variants in Candida albicans
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https://www.biorxiv.org/content/10.64898/2026.08.07.743545v1?rss=1
2026-08-09doi:10.64898/2026.08.07.743545Cold Spring Harbor Laboratory2026-08-09
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DrtA, a novel major facilitator superfamily transporter, contributes to intrinsic tolerance to the chemotherapeutic agent mitomycin C in Acinetobacter baumannii
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https://www.biorxiv.org/content/10.64898/2026.08.07.742647v1?rss=1
2026-08-09doi:10.64898/2026.08.07.742647Cold Spring Harbor Laboratory2026-08-09
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BACTERIAL AND FUNGAL CONTAMINATION OF STAIRCASE BANISTERS AT THE COLLEGE OF SCIENCE, KWAME NKRUMAH UNIVERSITY OF SCIENCE AND TECHNOLOGY, GHANA
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https://www.biorxiv.org/content/10.64898/2026.08.07.743594v1?rss=1
2026-08-09doi:10.64898/2026.08.07.743594Cold Spring Harbor Laboratory2026-08-09
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A membrane-impermeant nucleic acid dye converts bacteriophage plaque assays into a machine-readable format for automated counting
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https://www.biorxiv.org/content/10.64898/2026.08.07.741843v1?rss=1
2026-08-09doi:10.64898/2026.08.07.741843Cold Spring Harbor Laboratory2026-08-09
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Characterisation and manufacture of a Neisseria gonorrhoeae challenge agent for use in an oropharyngeal controlled human infection model
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https://www.biorxiv.org/content/10.64898/2026.08.06.743127v1?rss=1
2026-08-07doi:10.64898/2026.08.06.743127Cold Spring Harbor Laboratory2026-08-07
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Ca. Steroidedax gorgoniicola, a heterotrophic coral associate with horizontally acquired genes from Endozoicomonadaceae
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https://www.biorxiv.org/content/10.64898/2026.08.06.743379v1?rss=1
2026-08-07doi:10.64898/2026.08.06.743379Cold Spring Harbor Laboratory2026-08-07
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Nitrate-Reducing Commensals Reshape Oral Biofilm Ecology and Reveal Hcp as a Critical Determinant of Porphyromonas gingivalis Persistence
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https://www.biorxiv.org/content/10.64898/2026.08.06.743060v1?rss=1
2026-08-07doi:10.64898/2026.08.06.743060Cold Spring Harbor Laboratory2026-08-07
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Per-and polyfluoroalkyl substances (PFAS) driven reorganization of brain metabolism is impacted by resident microbiota
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https://www.biorxiv.org/content/10.64898/2026.08.07.743341v1?rss=1
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Vibrio cholerae VgrG1-ACD Targets E. coli MreB and Regulates Cellular Morphology
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https://www.biorxiv.org/content/10.64898/2026.08.07.743456v1?rss=1
2026-08-07doi:10.64898/2026.08.07.743456Cold Spring Harbor Laboratory2026-08-07
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Could microbes be the architects of improved soil structure under Miscanthus x giganteus?
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https://www.biorxiv.org/content/10.64898/2026.08.06.743358v1?rss=1
2026-08-07doi:10.64898/2026.08.06.743358Cold Spring Harbor Laboratory2026-08-07
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Genome-resolved biogeography reveals multidimensional structuring of freshwater giant viruses across global deep lakes
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https://www.biorxiv.org/content/10.64898/2026.08.06.743156v1?rss=1
2026-08-07doi:10.64898/2026.08.06.743156Cold Spring Harbor Laboratory2026-08-07
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Virion-wide interactome mapping of HSV-1 reveals maturation-dependent remodeling and convergent organization of herpesvirus tegument networks
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https://www.biorxiv.org/content/10.64898/2026.08.07.743351v1?rss=1
2026-08-07doi:10.64898/2026.08.07.743351Cold Spring Harbor Laboratory2026-08-07
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Conserved cis and trans communication domains mediate module interaction in glycopeptide antibiotic NRPS assembly lines
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https://www.biorxiv.org/content/10.64898/2026.08.07.743486v1?rss=1
2026-08-07doi:10.64898/2026.08.07.743486Cold Spring Harbor Laboratory2026-08-07
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Cellular basis of B12 uptake and remodelling in microalgae revealed using a novel bioassay
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https://www.biorxiv.org/content/10.64898/2026.08.07.738727v1?rss=1
2026-08-07doi:10.64898/2026.08.07.738727Cold Spring Harbor Laboratory2026-08-07
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Mathematical Modelling of Bacterial DNA Inversion Dynamics Uncovers an Organized Multi-Locus Response to Phage Predation in Bacteroides fragilis
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https://www.biorxiv.org/content/10.64898/2026.08.07.743496v1?rss=1
2026-08-07doi:10.64898/2026.08.07.743496Cold Spring Harbor Laboratory2026-08-07
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Bacterial Extracellular Vesicles from Chromobacterium subtsugae and Bacillus thuringiensis as Cell-Free Bioinsecticidal Nanocarriers Against the Soybean Pest Euschistus heros
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https://www.biorxiv.org/content/10.64898/2026.08.07.743497v1?rss=1
2026-08-07doi:10.64898/2026.08.07.743497Cold Spring Harbor Laboratory2026-08-07
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CagA delivery by the Helicobacter pylori Cag-Type IV Secretion System confers fitness benefits and costs during stomach infection
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https://www.biorxiv.org/content/10.64898/2026.08.07.743500v1?rss=1
2026-08-07doi:10.64898/2026.08.07.743500Cold Spring Harbor Laboratory2026-08-07
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Functional analysis of novel microneme proteins from Plasmodium vivax blood stages identifies vaccine candidates
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https://www.biorxiv.org/content/10.64898/2026.08.07.743484v1?rss=1
2026-08-07doi:10.64898/2026.08.07.743484Cold Spring Harbor Laboratory2026-08-07
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Root-associated microbial community recruitment in two citrus rootstocks subjected to water and salinity stresses
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https://www.biorxiv.org/content/10.64898/2026.08.06.743354v1?rss=1
2026-08-07doi:10.64898/2026.08.06.743354Cold Spring Harbor Laboratory2026-08-07
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The roles and synthesis of inorganic polyphosphate in Bacillus cereus
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https://www.biorxiv.org/content/10.64898/2026.08.04.742738v1?rss=1
2026-08-07doi:10.64898/2026.08.04.742738Cold Spring Harbor Laboratory2026-08-07
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Surveying armadillo and bat trypanosomes by DNA metabarcoding with Oxford Nanopore Technologies sequencing: the importance of fine-tuning parameters to identify mixed infections
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https://www.biorxiv.org/content/10.64898/2026.08.03.742417v1?rss=1
2026-08-07doi:10.64898/2026.08.03.742417Cold Spring Harbor Laboratory2026-08-07
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High-throughput dual bioreporter screening reveals distributed regulation of biofilm matrix components in Staphylococcus aureus
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https://www.biorxiv.org/content/10.64898/2026.08.04.742763v1?rss=1
2026-08-07doi:10.64898/2026.08.04.742763Cold Spring Harbor Laboratory2026-08-07