bioRxiv Subject Collection: Microbiology https://biorxiv.org This feed contains articles for bioRxiv Subject Collection "Microbiology" bioRxiv bioRxiv https://www.biorxiv.org/sites/default/files/bioRxiv_article.jpg https://www.biorxiv.org <![CDATA[ Piezophilic activity dominates the Puerto Rico Trench deep subseafloor biosphere ]]> https://www.biorxiv.org/content/10.64898/2026.09.30.755482v1?rss=1 2026-10-01 doi:10.64898/2026.09.30.755482 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ RecBCD Prevents Bacterial Autoimmunity by Clearing Self-DNA Ends Produced During Replication Termination ]]> https://www.biorxiv.org/content/10.64898/2026.09.30.755081v1?rss=1 2026-10-01 doi:10.64898/2026.09.30.755081 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Human-targeted drugs extensively reshape regulatory networks controlling virulence and antibiotic resistance in Salmonella Typhimurium ]]> https://www.biorxiv.org/content/10.64898/2026.09.30.755304v1?rss=1 2026-10-01 doi:10.64898/2026.09.30.755304 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Evaluation of Human Norovirus Replication in Salivary Gland Cells ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755260v1?rss=1 2026-10-01 doi:10.64898/2026.09.29.755260 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Non-coding RNAs drive transcriptional network rewiring underlying thermal dimorphism in a human pathogenic fungus ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755541v1?rss=1 2026-10-01 doi:10.64898/2026.09.29.755541 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Regulatory and metabolic integration accompany plasmid domestication during adaptation to a plant-associated lifestyle ]]> https://www.biorxiv.org/content/10.64898/2026.09.30.755635v1?rss=1 2026-10-01 doi:10.64898/2026.09.30.755635 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Sensitivity of Human Coronaviruses (HCoVs) to Heme Metabolism: Mechanisms Underlying Antiviral Effects ]]> https://www.biorxiv.org/content/10.64898/2026.09.30.755704v1?rss=1 2026-10-01 doi:10.64898/2026.09.30.755704 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ A defined rumen-native microbial consortium is associated with reduced culling risk across commercial dairy herds ]]> https://www.biorxiv.org/content/10.64898/2026.10.01.755474v1?rss=1 2026-10-01 doi:10.64898/2026.10.01.755474 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Isolation and characterisation of Lytic Jumbo Klebsiella phage BMPCR_005026 ]]> https://www.biorxiv.org/content/10.64898/2026.09.30.755614v1?rss=1 2026-10-01 doi:10.64898/2026.09.30.755614 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ The HSV-1 LAT enhancer regulates locus-specific H3.1 enrichment during early lytic infection ]]> https://www.biorxiv.org/content/10.64898/2026.09.30.755688v1?rss=1 2026-10-01 doi:10.64898/2026.09.30.755688 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Giant bacteria in gut microbiomes ]]> https://www.biorxiv.org/content/10.64898/2026.09.30.750856v1?rss=1 2026-10-01 doi:10.64898/2026.09.30.750856 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ The protein phosphatase 2A catalytic subunit Pph22 partners with Tap42 and Rrd2 to control viability and virulence in Cryptococcus neoformans ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755495v1?rss=1 2026-10-01 doi:10.64898/2026.09.29.755495 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Adaptive respiratory bypass restores oxidative metabolism in NADH dehydrogenase-deficient Escherichia coli ]]> https://www.biorxiv.org/content/10.64898/2026.10.01.755914v1?rss=1 2026-10-01 doi:10.64898/2026.10.01.755914 Cold Spring Harbor Laboratory 2026-10-01 <![CDATA[ Antibody-recruiting molecules based on mimotope fusion peptides and a dimeric antibiotic ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755485v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755485 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Capsule types driving carbapenem-resistant Klebsiella pneumoniae in Pakistan are largely absent from the phage literature ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755075v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755075 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Single-cell transcriptomics reveals life cycle and cell cycle gene expression dynamics during in vitro growth of two Leishmania species ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755301v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755301 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ An endonuclease V protects Bacillus subtilis against a deaminase toxin and a uracil-containing phage ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755374v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755374 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Redox oscillation frequency reshapes antibiotic resistance-gene expression through metabolic and ecological selection in a freshwater community ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755287v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755287 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Virophage-like viruses replicate with a candidate phycodnavirus of C. parva ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755237v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755237 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Growth phase-dependent priming of galactose metabolism in Escherichia coli ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755191v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755191 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Characterization of central carbon metabolism of Acinetobacter sp. Tol 5 based on 13C-metabolic flux analysis ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755562v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755562 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Oysters from five continents harbour a vast array of previously unknown RNA viruses, including many putative viruses of vertebrates ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755536v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755536 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Leveraging genomes and metagenome-assembled genomes unveils novel diversity and transmission between public transport and clinical settings in Acinetobacter ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755473v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755473 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Functional Divergence in Gut Clostridia from Hadza Hunter-Gatherers Reveals Diet-Adapted Metabolic Machinery That Shapes Gut Ecology ]]> https://www.biorxiv.org/content/10.64898/2026.09.29.755216v1?rss=1 2026-09-30 doi:10.64898/2026.09.29.755216 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ The global evolutionary dynamics of natural capsule switching in a human-restricted bacterial pathogen ]]> https://www.biorxiv.org/content/10.64898/2026.09.24.752487v1?rss=1 2026-09-30 doi:10.64898/2026.09.24.752487 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Biogenic flavonoid capping converts a cytotoxic Carica papaya fraction into a selective, cross-serotype Dengue entry inhibitor ]]> https://www.biorxiv.org/content/10.64898/2026.09.26.754612v1?rss=1 2026-09-30 doi:10.64898/2026.09.26.754612 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ Development of lyophilized faecal inoculation capsules for use in koala rehabilitation and conservation ]]> https://www.biorxiv.org/content/10.64898/2026.09.28.754943v1?rss=1 2026-09-30 doi:10.64898/2026.09.28.754943 Cold Spring Harbor Laboratory 2026-09-30 <![CDATA[ De novo minibinders targeting RH5 achieve nanomolar inhibition of blood-stage malaria replication ]]> https://www.biorxiv.org/content/10.64898/2026.09.28.755224v1?rss=1 2026-09-29 doi:10.64898/2026.09.28.755224 Cold Spring Harbor Laboratory 2026-09-29 <![CDATA[ Reverse genetics system for emerging tick-borne orthonairovirus highlights dispensable N-terminal region of Gn associated with replication in tick vectors ]]> https://www.biorxiv.org/content/10.64898/2026.09.28.755240v1?rss=1 2026-09-29 doi:10.64898/2026.09.28.755240 Cold Spring Harbor Laboratory 2026-09-29 <![CDATA[ In vitro antimicrobial resistance in clinical isolates of bacterial pathogens causing bovine respiratory disease: a systematic review and meta-analysis ]]> https://www.biorxiv.org/content/10.64898/2026.09.28.754992v1?rss=1 2026-09-29 doi:10.64898/2026.09.28.754992 Cold Spring Harbor Laboratory 2026-09-29