bioRxiv Subject Collection: Microbiology
https://biorxiv.org
This feed contains articles for bioRxiv Subject Collection "Microbiology"
bioRxivbioRxivhttps://www.biorxiv.org/sites/default/files/bioRxiv_article.jpg
https://www.biorxiv.org
<![CDATA[
Glyphosate, a herbicide, and fosfomycin, an antibiotic in clinical use- evidence of common selectable genotypes
]]>
https://www.biorxiv.org/content/10.64898/2026.05.15.725383v1?rss=1
2026-05-26doi:10.64898/2026.05.15.725383Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
Antigenic characterization of SARS-CoV-2 variants BA.3.2.1 and BA.3.2.2 in three animal models
]]>
https://www.biorxiv.org/content/10.64898/2026.05.24.727525v1?rss=1
2026-05-26doi:10.64898/2026.05.24.727525Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
First evaluation of a human DPP4 transgenic hamster model for MERS-CoV pathogenesis and transmission
]]>
https://www.biorxiv.org/content/10.64898/2026.05.26.727115v1?rss=1
2026-05-26doi:10.64898/2026.05.26.727115Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
Transgenic human dipeptidyl peptidase-4 Syrian hamsters support MERS coronavirus infection and contact transmission
]]>
https://www.biorxiv.org/content/10.64898/2026.05.26.725122v1?rss=1
2026-05-26doi:10.64898/2026.05.26.725122Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
Dynamic partitioning shapes the in vivo organization of the E. coli RNA degradosome
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727690v1?rss=1
2026-05-26doi:10.64898/2026.05.25.727690Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
Substrate and target selectivity of 4'-fluoroadenosine against viral and host polymerases
]]>
https://www.biorxiv.org/content/10.64898/2026.05.22.727251v1?rss=1
2026-05-26doi:10.64898/2026.05.22.727251Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
A fungal pathogen effector that shapes host plant microbiota kills bacteria through lipoteichoic acid binding and membrane disruption
]]>
https://www.biorxiv.org/content/10.64898/2026.05.26.727833v1?rss=1
2026-05-26doi:10.64898/2026.05.26.727833Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
Beyond the Billion: Dose-Response Immunophenotyping and Machine Learning Classification of Live versus Heat-Inactivated Gram-Positive Probiotic Strains in Human Peripheral Blood Mononuclear Cells
]]>
https://www.biorxiv.org/content/10.64898/2026.05.26.727599v1?rss=1
2026-05-26doi:10.64898/2026.05.26.727599Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
Genome-resolved house microbiome exhibits location-specific metabolic partitioning, and harbors hosts with clinically relevant antibiotic resistance genes
]]>
https://www.biorxiv.org/content/10.64898/2026.05.24.727512v1?rss=1
2026-05-26doi:10.64898/2026.05.24.727512Cold Spring Harbor Laboratory2026-05-26
<![CDATA[
Purine and pyrimidine analogues differentially regulate cell wall precursor biosynthesis to control β-lactam susceptibility in methicillin resistant Staphylococcus aureus
]]>
https://www.biorxiv.org/content/10.64898/2026.05.24.727567v1?rss=1
2026-05-25doi:10.64898/2026.05.24.727567Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Evaluation of orange pulping residues as an alternative growth medium for Thraustochytrium sp.
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727442v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727442Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Heterologous expression in E. coli reveals the bicarbonate transporter BicA2 drives carbon uptake in marine Prochlorococcus spp.
]]>
https://www.biorxiv.org/content/10.64898/2026.05.23.727450v1?rss=1
2026-05-25doi:10.64898/2026.05.23.727450Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Computational prediction resolves thousands of homooligomeric phage protein structures
]]>
https://www.biorxiv.org/content/10.64898/2026.05.24.727406v1?rss=1
22,000 phage protein sequences in the PHROGs database, our approach revealed extensive diversity in phage homooligomeric protein complexes. Benchmarking against protein language model-based predictors on a curated reference set of known phage homooligomers demonstrated superior accuracy of our structure-based method, achieving robust performance in classifying protein homooligomeric states, with the highest accuracy observed for trimers and higher-order complexes. These results highlight the value of computational predictions to decipher the complexities of the vast viral sequence space. All predicted complex structures and functional inferences are made publicly available to support structural and functional studies of phage proteins.
]]>2026-05-25doi:10.64898/2026.05.24.727406Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Identification of Novel Gamma Radiation-Responsive Genes in the Thiosulfate-Oxidizing Bacterium Limnobacter thiooxidans
]]>
https://www.biorxiv.org/content/10.64898/2026.05.23.727404v1?rss=1
2026-05-25doi:10.64898/2026.05.23.727404Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
A billion-year-old bacterial machinery replicates plastid DNA and supports kleptoplastidy
]]>
https://www.biorxiv.org/content/10.64898/2026.05.23.727376v1?rss=1
2026-05-25doi:10.64898/2026.05.23.727376Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Growth rate dependent DNA methylation patterns along bacterial chromosomes
]]>
https://www.biorxiv.org/content/10.64898/2026.05.23.720832v1?rss=1
2026-05-25doi:10.64898/2026.05.23.720832Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Environmental context reveals a conditional role of the Tol-Pal system in envelope organization in Acinetobacter baumannii
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727595v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727595Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Genomic Decoding of Specialized Aromatic Hydrocarbon Degradation in Mangrove-Derived Gordonia sp. B7 2
]]>
https://www.biorxiv.org/content/10.64898/2026.05.23.727409v1?rss=1
2026-05-25doi:10.64898/2026.05.23.727409Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Diabetes and Immunosuppression Drive Distinct Patterns of Candidozyma auris Skin Colonization and Dissemination in Mice
]]>
https://www.biorxiv.org/content/10.64898/2026.05.24.727467v1?rss=1
2026-05-25doi:10.64898/2026.05.24.727467Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Prophage and metabolic determinants of Staphylococcus aureus survival to vancomycin identified via TraDIS screening
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727636v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727636Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Microbial cross-feeding interactions reshape evolutionary trajectories of consumers by preserving motility.
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727712v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727712Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Early-life canine gut microbiome maturation follows a shared age-diet trajectory within persistent host-specific structure
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727648v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727648Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Genetic profiling via a novel PCR-RFLP method enabled identification of four genera of anaerobic gut fungi isolated from nyala, giraffe, and zebra hosts
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727589v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727589Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
OxyR regulates the oxidative stress response in Zymomonas mobilis during oxic growth and anoxic biofuel fermentation
]]>
https://www.biorxiv.org/content/10.64898/2026.05.23.727408v1?rss=1
2026-05-25doi:10.64898/2026.05.23.727408Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Genomic Diagnostics for Drug-Resistant Mycobacterium tuberculosis: Computational Prediction of Antimicrobial Resistance
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727578v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727578Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Cryptococcus gattii responds to mycobacterial exposure through coordinated remodelling of population dynamics and cell surface architecture, enhancing pulmonary persistence in a co-infection model
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727575v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727575Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Structure of an eDNA-scaffolded Scp-like protease filament from Streptococcus sanguinis
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.726231v1?rss=1
2026-05-25doi:10.64898/2026.05.25.726231Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Effects of sulfide on the activity of the ammonia-oxidizing archaeon Nitrosopumilus maritimus SCM1
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727494v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727494Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
Deciphering the Acetaldehyde Signaling Network Underlying Bacterial Escape from Protozoan Predators
]]>
https://www.biorxiv.org/content/10.64898/2026.05.25.727473v1?rss=1
2026-05-25doi:10.64898/2026.05.25.727473Cold Spring Harbor Laboratory2026-05-25
<![CDATA[
The Cu-induced ScsD reductase is a membrane-bound redox partner of ScsB in the Salmonella envelope
]]>
https://www.biorxiv.org/content/10.64898/2026.05.22.727170v1?rss=1
2026-05-25doi:10.64898/2026.05.22.727170Cold Spring Harbor Laboratory2026-05-25