bioRxiv Subject Collection: Genomics Bioinformatics
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This feed contains articles for bioRxiv Subject Collection "Genomics Bioinformatics"
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https://www.biorxiv.org
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InterScale reveals multi-scale cellular interaction programs in spatial transcriptomics
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https://www.biorxiv.org/content/10.64898/2026.05.07.723456v1?rss=1
2026-05-11doi:10.64898/2026.05.07.723456Cold Spring Harbor Laboratory2026-05-11
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SRSA-VAE: Self-Attention-Based Feature Learning for Single-Cell Multimodal Clustering
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https://www.biorxiv.org/content/10.64898/2026.05.06.723212v1?rss=1
2026-05-11doi:10.64898/2026.05.06.723212Cold Spring Harbor Laboratory2026-05-11
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Temperate phage microdiversity reflects infant gut microbiome maturation independent of chronic undernutrition
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https://www.biorxiv.org/content/10.64898/2026.05.06.723284v1?rss=1
2026-05-10doi:10.64898/2026.05.06.723284Cold Spring Harbor Laboratory2026-05-10
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Deep Computational Anatomy via Latent-Aligned Multiview Normalizing Flows
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https://www.biorxiv.org/content/10.64898/2026.05.05.723039v1?rss=1
2026-05-10doi:10.64898/2026.05.05.723039Cold Spring Harbor Laboratory2026-05-10
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AI-enabled virtual immunopeptidomics links quantitative neoantigen presentation to immunogenicity
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https://www.biorxiv.org/content/10.64898/2026.05.05.722287v1?rss=1
2026-05-10doi:10.64898/2026.05.05.722287Cold Spring Harbor Laboratory2026-05-10
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Deciphering the epitranscriptomic code of RNA degradation with nanopore direct RNA sequencing
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https://www.biorxiv.org/content/10.64898/2026.05.09.723953v1?rss=1
2026-05-10doi:10.64898/2026.05.09.723953Cold Spring Harbor Laboratory2026-05-10
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Fatty Acid Oxidation Suppression Reprograms Fibroblasts in Fibrostenotic Crohns Disease
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https://www.biorxiv.org/content/10.64898/2026.05.06.723289v1?rss=1
2026-05-10doi:10.64898/2026.05.06.723289Cold Spring Harbor Laboratory2026-05-10
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scPlOver: inferring DNA content from amplification-free single-cell WGS using fragment overlaps
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https://www.biorxiv.org/content/10.64898/2026.05.06.722337v1?rss=1
2026-05-10doi:10.64898/2026.05.06.722337Cold Spring Harbor Laboratory2026-05-10
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Rubus armeniacus genome sequence reveals the secrets of blackberry anthocyanin biosynthesis
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https://www.biorxiv.org/content/10.64898/2026.05.05.723051v1?rss=1
2026-05-10doi:10.64898/2026.05.05.723051Cold Spring Harbor Laboratory2026-05-10
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The reliability and accuracy of recombination inferred by Shapeit2 duoHMM on whole genome sequence
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https://www.biorxiv.org/content/10.64898/2026.05.06.723015v1?rss=1
2026-05-10doi:10.64898/2026.05.06.723015Cold Spring Harbor Laboratory2026-05-10
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LIVIA: a browser-based tool for assessing and visualizing predicted protein interactions
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https://www.biorxiv.org/content/10.64898/2026.05.01.721633v1?rss=1
2026-05-10doi:10.64898/2026.05.01.721633Cold Spring Harbor Laboratory2026-05-10
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Wolves in black: multiple introgressions and natural selection may explain melanism in Italian wolves
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https://www.biorxiv.org/content/10.64898/2026.05.08.723698v1?rss=1
2026-05-09doi:10.64898/2026.05.08.723698Cold Spring Harbor Laboratory2026-05-09
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Deciphering the Molecular Structure of the Type III Secretion System in Chlamydia trachomatis for Structure-Based Therapeutic Targeting
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https://www.biorxiv.org/content/10.64898/2026.05.06.723290v1?rss=1
2026-05-09doi:10.64898/2026.05.06.723290Cold Spring Harbor Laboratory2026-05-09
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Know Your Alphabet: Conformational Noise, Latent-Space Encodings, and the Future of Structural Phylogenetics
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https://www.biorxiv.org/content/10.64898/2026.05.06.722973v1?rss=1
2026-05-09doi:10.64898/2026.05.06.722973Cold Spring Harbor Laboratory2026-05-09
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Environmental Regulation and Gene-by-Environment Interaction Influence RAP1 Activity and its Impact on Gene Expression
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https://www.biorxiv.org/content/10.64898/2026.05.06.723246v1?rss=1
2026-05-09doi:10.64898/2026.05.06.723246Cold Spring Harbor Laboratory2026-05-09
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A structural grammar of truncation across the human homodimer landscape
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https://www.biorxiv.org/content/10.64898/2026.05.06.723091v1?rss=1
2026-05-09doi:10.64898/2026.05.06.723091Cold Spring Harbor Laboratory2026-05-09
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Building an open ecosystem for molecular neuroimaging: standards and tools from the OpenNeuroPET initiative
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https://www.biorxiv.org/content/10.64898/2026.05.06.722876v1?rss=1
2026-05-09doi:10.64898/2026.05.06.722876Cold Spring Harbor Laboratory2026-05-09
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A Fractal-Dimension Framework for Quantifying Self-Similarity in Chromatin Folding
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https://www.biorxiv.org/content/10.64898/2026.05.06.723123v1?rss=1
2026-05-09doi:10.64898/2026.05.06.723123Cold Spring Harbor Laboratory2026-05-09
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Machine learning cross-platform proteomic imputation enables protein quality scoring and replication of epidemiological associations
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https://www.biorxiv.org/content/10.64898/2026.05.05.723059v1?rss=1
2026-05-09doi:10.64898/2026.05.05.723059Cold Spring Harbor Laboratory2026-05-09
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Cross Dataset Transcriptomic Analysis Identifies Oxidative Stress Inflammation Gene Networks Modulated by Nutrigenomic Interventions in Parkinson Disease
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https://www.biorxiv.org/content/10.64898/2026.05.05.723100v1?rss=1
2026-05-09doi:10.64898/2026.05.05.723100Cold Spring Harbor Laboratory2026-05-09
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Sex-biased Fibroblast Subpopulations and Transcriptional Programs Reveal Mechanisms of Skin Lesion Development in Systemic Sclerosis
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https://www.biorxiv.org/content/10.64898/2026.05.06.723148v1?rss=1
2026-05-09doi:10.64898/2026.05.06.723148Cold Spring Harbor Laboratory2026-05-09
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PromptBio-Bench: Benchmarking LLM-based Bioinformatics Agents for End-to-End Data Analysis
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https://www.biorxiv.org/content/10.64898/2026.05.05.723092v1?rss=1
2026-05-08doi:10.64898/2026.05.05.723092Cold Spring Harbor Laboratory2026-05-08
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Structural bias in machine learning-guided peptide design
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https://www.biorxiv.org/content/10.64898/2026.05.06.721805v1?rss=1
2026-05-08doi:10.64898/2026.05.06.721805Cold Spring Harbor Laboratory2026-05-08
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Open-Rosalind: Tool-First Biomedical LLM Agents with Process-Aware Benchmarking
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https://www.biorxiv.org/content/10.64898/2026.05.06.722404v1?rss=1
2026-05-08doi:10.64898/2026.05.06.722404Cold Spring Harbor Laboratory2026-05-08
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vartracker: an end-to-end tool for pathogen longitudinal variant analysis and visualisation
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https://www.biorxiv.org/content/10.64898/2026.05.06.723370v1?rss=1
2026-05-08doi:10.64898/2026.05.06.723370Cold Spring Harbor Laboratory2026-05-08
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BART-spatial unravels biologically significant transcriptional regulators from spatial omics data
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https://www.biorxiv.org/content/10.64898/2026.05.05.723027v1?rss=1
2026-05-08doi:10.64898/2026.05.05.723027Cold Spring Harbor Laboratory2026-05-08
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RAPID: an interactive R/Shiny platform for end-to-end 16S rRNA and ITS amplicon sequence analysis using DADA2
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https://www.biorxiv.org/content/10.64898/2026.05.05.723040v1?rss=1
2026-05-08doi:10.64898/2026.05.05.723040Cold Spring Harbor Laboratory2026-05-08
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STARMAP: A 3D-informed framework for mapping functional regions in proteins to regulatory and cellular phenotypes
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https://www.biorxiv.org/content/10.64898/2026.05.05.723010v1?rss=1
2026-05-08doi:10.64898/2026.05.05.723010Cold Spring Harbor Laboratory2026-05-08
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TopoFuseNet: Hierarchical Graph Representation Learning with Multi-Scale Topological Features for Accurate Drug Synergy Prediction
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https://www.biorxiv.org/content/10.64898/2026.05.05.722940v1?rss=1
2026-05-08doi:10.64898/2026.05.05.722940Cold Spring Harbor Laboratory2026-05-08
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A Differentiable dFBA Simulator for Scalable Bayesian Inference over Microbial Metabolic Models
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https://www.biorxiv.org/content/10.64898/2026.05.05.722888v1?rss=1
2026-05-08doi:10.64898/2026.05.05.722888Cold Spring Harbor Laboratory2026-05-08