bioRxiv Subject Collection: Genomics Bioinformatics
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This feed contains articles for bioRxiv Subject Collection "Genomics Bioinformatics"
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Immunoinformatics-Guided Design and In Silico Evaluation of a Multi-Epitope Vaccine Against Influenza A H10N5 and H3N2 Strains Based on Hemagglutinin and Neuraminidase Proteins
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https://www.biorxiv.org/content/10.64898/2026.07.03.736294v1?rss=1
2026-07-08doi:10.64898/2026.07.03.736294Cold Spring Harbor Laboratory2026-07-08
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PredHLM: quantitative and interpretable prediction of metabolic half-life in human liver microsomes
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https://www.biorxiv.org/content/10.64898/2026.07.02.736062v1?rss=1
2026-07-08doi:10.64898/2026.07.02.736062Cold Spring Harbor Laboratory2026-07-08
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FEATMAP: Targeted Correction of Acquisition Signatures Harmonizes Medical Foundation Model Embeddings and Enables Robust Task Generalization
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https://www.biorxiv.org/content/10.64898/2026.07.02.736184v1?rss=1
2026-07-08doi:10.64898/2026.07.02.736184Cold Spring Harbor Laboratory2026-07-08
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Interpretable and scalable spatial gene set activity analysis with GESSO uncovers functional tissue architecture
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https://www.biorxiv.org/content/10.64898/2026.07.02.736099v1?rss=1
2026-07-08doi:10.64898/2026.07.02.736099Cold Spring Harbor Laboratory2026-07-08
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CSGDA: A Cell State-Guided Graph Domain Adaptation Network for Single-Cell Drug Response Prediction
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https://www.biorxiv.org/content/10.64898/2026.07.02.735966v1?rss=1
2026-07-08doi:10.64898/2026.07.02.735966Cold Spring Harbor Laboratory2026-07-08
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A systematic analysis of machine learning pipelines for robust antimicrobial resistance prediction
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https://www.biorxiv.org/content/10.64898/2026.06.28.734076v1?rss=1
2026-07-08doi:10.64898/2026.06.28.734076Cold Spring Harbor Laboratory2026-07-08
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An Integrated Knowledge Graph and Network Medicine Pipeline for Drug Repurposing: Benchmarking Across Human Diseases and Application to Amyotrophic Lateral Sclerosis
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https://www.biorxiv.org/content/10.64898/2026.07.03.736387v1?rss=1
2026-07-08doi:10.64898/2026.07.03.736387Cold Spring Harbor Laboratory2026-07-08
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Beyond infinite sites: Generalized ABBA-BABA statistic for deeper phylogenies
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https://www.biorxiv.org/content/10.64898/2026.07.06.736715v1?rss=1
2026-07-08doi:10.64898/2026.07.06.736715Cold Spring Harbor Laboratory2026-07-08
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EpiBinder: a multimodal framework for cell-type-specific prediction and interpretation of transcription factor binding
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https://www.biorxiv.org/content/10.64898/2026.07.06.736502v1?rss=1
2026-07-08doi:10.64898/2026.07.06.736502Cold Spring Harbor Laboratory2026-07-08
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Gene regulatory co-expression networks decipher potential lncRNA-miRNA-mRNA interactions modulating transcription regulation in neurodegeneration
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https://www.biorxiv.org/content/10.64898/2026.07.03.736295v1?rss=1
2026-07-08doi:10.64898/2026.07.03.736295Cold Spring Harbor Laboratory2026-07-08
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A foundation model enables prediction of natural product molecular properties, bioactivity, and structural similarity from biosynthetic gene cluster sequence
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https://www.biorxiv.org/content/10.64898/2026.07.05.736569v1?rss=1
2026-07-07doi:10.64898/2026.07.05.736569Cold Spring Harbor Laboratory2026-07-07
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Region-Level Design and Analysis of CRISPR Perturbation Screens with FRACTEL
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https://www.biorxiv.org/content/10.64898/2026.07.06.736794v1?rss=1
2026-07-07doi:10.64898/2026.07.06.736794Cold Spring Harbor Laboratory2026-07-07
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Integrated Framework for Probing Multimodal Protein Foundation Models with Structure-Functional Interpretability Analysis in Detection of Allosteric Binding Sites
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https://www.biorxiv.org/content/10.64898/2026.07.02.736203v1?rss=1
2026-07-07doi:10.64898/2026.07.02.736203Cold Spring Harbor Laboratory2026-07-07
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Tracing the regulatory atlas of non-coding RNA in human labour
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https://www.biorxiv.org/content/10.64898/2026.07.06.736857v1?rss=1
2026-07-07doi:10.64898/2026.07.06.736857Cold Spring Harbor Laboratory2026-07-07
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netPCF: Geometry-Aware Pair Correlation Functions for Spatial Biology
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https://www.biorxiv.org/content/10.64898/2026.07.02.736020v1?rss=1
2026-07-07doi:10.64898/2026.07.02.736020Cold Spring Harbor Laboratory2026-07-07
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MetaboCensoR: A Shiny Application for Data Filtering in Untargeted LC-MS Metabolomics to Enhance Interpretability
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https://www.biorxiv.org/content/10.64898/2026.07.02.735197v1?rss=1
2026-07-07doi:10.64898/2026.07.02.735197Cold Spring Harbor Laboratory2026-07-07
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Application of class-balancing algorithms to diverse plasma metabolomics datasets using brain tumor as an example
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https://www.biorxiv.org/content/10.64898/2026.07.02.735756v1?rss=1
2026-07-07doi:10.64898/2026.07.02.735756Cold Spring Harbor Laboratory2026-07-07
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Deep-Interact Studio: An Interactive Deep Learning Model Building Platform for Biomolecular Interaction Prediction
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https://www.biorxiv.org/content/10.64898/2026.07.02.736034v1?rss=1
2026-07-07doi:10.64898/2026.07.02.736034Cold Spring Harbor Laboratory2026-07-07
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BRAID: RT-PCR-calibrated conformal intervals for splicing ΔPSI
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https://www.biorxiv.org/content/10.64898/2026.07.02.736001v1?rss=1
2026-07-07doi:10.64898/2026.07.02.736001Cold Spring Harbor Laboratory2026-07-07
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Cross-architecture ensembling of DNA foundation models improves the precision and stability of chimera detection in long-read metagenomic bins
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https://www.biorxiv.org/content/10.64898/2026.07.02.735979v1?rss=1
2026-07-07doi:10.64898/2026.07.02.735979Cold Spring Harbor Laboratory2026-07-07
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UVfinder: a tool to extract bryophyte sex-linked gene copies from the GoFlag408 probe set
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https://www.biorxiv.org/content/10.64898/2026.07.01.735932v1?rss=1
2026-07-07doi:10.64898/2026.07.01.735932Cold Spring Harbor Laboratory2026-07-07
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Genomic compartmentalization of pervasive sex-biased gene expression in the vine mealybug Planococcus ficus
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https://www.biorxiv.org/content/10.64898/2026.07.01.735863v1?rss=1
2026-07-07doi:10.64898/2026.07.01.735863Cold Spring Harbor Laboratory2026-07-07
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ORBIT: Annotation-Aware Empirical Enrichment and Semantic Reranking for Interpretable Functional-Class Recovery
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https://www.biorxiv.org/content/10.64898/2026.07.01.735870v1?rss=1
2026-07-07doi:10.64898/2026.07.01.735870Cold Spring Harbor Laboratory2026-07-07
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SupeRJump: Determining normal and leukemic differentiation fate through semi-supervised jump diffusion modeling
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https://www.biorxiv.org/content/10.64898/2026.07.01.735284v1?rss=1
2026-07-07doi:10.64898/2026.07.01.735284Cold Spring Harbor Laboratory2026-07-07
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Determinants of Blood Group Antigen Expression and Prediction of Phenotypes by Machine Learning
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https://www.biorxiv.org/content/10.64898/2026.07.01.735824v1?rss=1
2026-07-07doi:10.64898/2026.07.01.735824Cold Spring Harbor Laboratory2026-07-07
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TrustPGS: When can a polygenic score be trusted? A per-individual reliability framework across ancestries
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https://www.biorxiv.org/content/10.64898/2026.07.01.735762v1?rss=1
2026-07-07doi:10.64898/2026.07.01.735762Cold Spring Harbor Laboratory2026-07-07
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Genome editing of marsupial RSX reveals conserved and divergent principles in mammalian X-inactivation
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https://www.biorxiv.org/content/10.64898/2026.07.01.735830v1?rss=1
2026-07-07doi:10.64898/2026.07.01.735830Cold Spring Harbor Laboratory2026-07-07
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PACMOS: an R package for Projection And Classification of Multi-Omic Samples
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https://www.biorxiv.org/content/10.64898/2026.07.01.735542v1?rss=1
2026-07-07doi:10.64898/2026.07.01.735542Cold Spring Harbor Laboratory2026-07-07
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The genome organizer SMC1A mediates the gene expression response in inflammation by dissociating from nuclear-speckles and redistributing to the nuclear periphery
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https://www.biorxiv.org/content/10.64898/2026.07.06.736754v1?rss=1
2026-07-07doi:10.64898/2026.07.06.736754Cold Spring Harbor Laboratory2026-07-07
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ThermoFusion: A Multimodal Deep Learning Framework for Generalizable Prediction of Enzyme Thermostability
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https://www.biorxiv.org/content/10.64898/2026.07.04.736494v1?rss=1
2026-07-07doi:10.64898/2026.07.04.736494Cold Spring Harbor Laboratory2026-07-07