bioRxiv Subject Collection: Genetics Plant Biology
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This feed contains articles for bioRxiv Subject Collection "Genetics Plant Biology"
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A Natural qE- and qZ-Deficient Alga Retains Functional Plant-Like and Chlorophycean Violaxanthin De-Epoxidases
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https://www.biorxiv.org/content/10.64898/2026.09.26.754548v1?rss=1
2026-10-02doi:10.64898/2026.09.26.754548Cold Spring Harbor Laboratory2026-10-02
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The ortholog of the Human T2D Risk Gene STEAP2 is Required for Glucose Stimulated Insulin Secretion in Mice
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https://www.biorxiv.org/content/10.64898/2026.09.26.754731v1?rss=1
2026-10-02doi:10.64898/2026.09.26.754731Cold Spring Harbor Laboratory2026-10-02
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Divergence in wilt tolerance across the range of Mimulus guttatus in the absence of stomatal regulation
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https://www.biorxiv.org/content/10.64898/2026.09.30.755782v1?rss=1
2026-10-02doi:10.64898/2026.09.30.755782Cold Spring Harbor Laboratory2026-10-02
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Jasmonate-induced expansion of the MYC2 cistrome occurs within a preconfigured chromatin landscape
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https://www.biorxiv.org/content/10.64898/2026.10.01.755910v1?rss=1
2026-10-02doi:10.64898/2026.10.01.755910Cold Spring Harbor Laboratory2026-10-02
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Cytokinin Mediates Photosynthesis and Senescence Action Through CHLOROPLAST IMPORT APPARATUS 2 (CIA2) and CIA2-like (CIL)
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https://www.biorxiv.org/content/10.64898/2026.09.30.755754v1?rss=1
2026-10-02doi:10.64898/2026.09.30.755754Cold Spring Harbor Laboratory2026-10-02
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Genetic backgrounds and sex modulate indirect genetic effects of Epha4 in laboratory mice
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https://www.biorxiv.org/content/10.64898/2026.09.30.755759v1?rss=1
2026-10-01doi:10.64898/2026.09.30.755759Cold Spring Harbor Laboratory2026-10-01
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Finding dugongs through environmental DNA: a complementary tool for population surveillance
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https://www.biorxiv.org/content/10.64898/2026.09.30.755531v1?rss=1
2026-10-01doi:10.64898/2026.09.30.755531Cold Spring Harbor Laboratory2026-10-01
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Multi-omics fine-mapping uncovers a pleiotropic intestinal enhancer variant linking PMAIP1 regulation to pig growth and fatness
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https://www.biorxiv.org/content/10.64898/2026.09.26.754598v1?rss=1
G) as the leading candidate variant. The T>G substitution produced marked allele-specific differences in enhancer activity and nuclear-protein binding, while transcription-factor co-transfection assays identified FOXL1-responsive, allele-dependent regulatory activity. Chromatin interaction and CRISPRa analyses supported a regulatory connection between the rs334769214-containing enhancer and PMAIP1, and PMAIP1 overexpression promoted apoptosis in porcine intestinal epithelial cells. In the capture-sequenced subset, the G allele was associated with higher ADG and BF, consistent with a relative loss-of-activation model. Together, these findings delineate a candidate FOXL1-enhancer-PMAIP1 regulatory pathway and demonstrate how multi-omics fine-mapping can advance a shared quantitative-trait locus toward a testable molecular mechanism underlying variation in growth and fatness.
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Argonaute 15 regulates immunity of potato to filamentous pathogens through transposon-derived small RNAs
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https://www.biorxiv.org/content/10.64898/2026.09.25.754549v1?rss=1
2026-10-01doi:10.64898/2026.09.25.754549Cold Spring Harbor Laboratory2026-10-01
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Fluorescent Ubiquitination-based Trbl Turnover Indicator (FUTTI): A tool to detect activity of the Tribbles pseudokinase in vivo
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https://www.biorxiv.org/content/10.64898/2026.09.25.753906v1?rss=1
2026-10-01doi:10.64898/2026.09.25.753906Cold Spring Harbor Laboratory2026-10-01
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A genetic screen to identify novel interactions of the phosphatidylinositol phosphate signaling pathway in Drosophila spermatogenesis
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https://www.biorxiv.org/content/10.64898/2026.09.25.754494v1?rss=1
2026-10-01doi:10.64898/2026.09.25.754494Cold Spring Harbor Laboratory2026-10-01
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TET loss of function selects for aneuploidies that confer a proliferative advantage
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https://www.biorxiv.org/content/10.64898/2026.09.27.754858v1?rss=1
2026-10-01doi:10.64898/2026.09.27.754858Cold Spring Harbor Laboratory2026-10-01
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Social genetic effects on feed intake in pigs: from feeding visits to total intake
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https://www.biorxiv.org/content/10.64898/2026.09.28.755174v1?rss=1
2026-10-01doi:10.64898/2026.09.28.755174Cold Spring Harbor Laboratory2026-10-01
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NO VEIN is an ancestral immunity protein involved in plant-virus interaction
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https://www.biorxiv.org/content/10.64898/2026.09.30.755639v1?rss=1
2026-10-01doi:10.64898/2026.09.30.755639Cold Spring Harbor Laboratory2026-10-01
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Rice blast fungus hijacks a rice RALF peptide to initiate infection
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https://www.biorxiv.org/content/10.64898/2026.09.30.754903v1?rss=1
2026-10-01doi:10.64898/2026.09.30.754903Cold Spring Harbor Laboratory2026-10-01
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Towards operational epidemiology of Pyricularia oryzae in sports turf: contribution of a multi-matrix molecular monitoring strategy at stadium scale
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https://www.biorxiv.org/content/10.64898/2026.09.30.755619v1?rss=1
2026-10-01doi:10.64898/2026.09.30.755619Cold Spring Harbor Laboratory2026-10-01
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In which cases does it make sense to classify an individual into one population and what are the alternatives?
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https://www.biorxiv.org/content/10.64898/2026.09.26.754621v1?rss=1
2026-10-01doi:10.64898/2026.09.26.754621Cold Spring Harbor Laboratory2026-10-01
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Denisea fonensis (Thismiaceae), a new genus and species of mycoheterotroph from Guinea.
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https://www.biorxiv.org/content/10.64898/2026.09.28.755082v1?rss=1
2026-10-01doi:10.64898/2026.09.28.755082Cold Spring Harbor Laboratory2026-10-01
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SysNDD: A Systematic Database for Neurodevelopmental Disorders
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https://www.biorxiv.org/content/10.64898/2026.09.29.755401v1?rss=1
2026-10-01doi:10.64898/2026.09.29.755401Cold Spring Harbor Laboratory2026-10-01
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Single-cell proteomics resolves major cell populations and protein-defined chondrocyte states in the adult human osteoarthritic joint
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https://www.biorxiv.org/content/10.64898/2026.09.25.754302v1?rss=1
2026-09-30doi:10.64898/2026.09.25.754302Cold Spring Harbor Laboratory2026-09-30
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Mendel, a foundation model of human genetic variation, prioritizes regulatory variants and improves gene expression prediction
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https://www.biorxiv.org/content/10.64898/2026.09.28.755183v1?rss=1
2026-09-30doi:10.64898/2026.09.28.755183Cold Spring Harbor Laboratory2026-09-30
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Pervasive Somatic Mutations in NF1 Drive Cell Type and Spatially Specific Clonal Selection in Neurofibromatosis
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https://www.biorxiv.org/content/10.64898/2026.09.29.755447v1?rss=1
1.7 million single cells across donors with the cancer predisposition syndrome neurofibromatosis type 1 (NF-1), shows that somatic 'second-hit' mutations in NF1 are pervasive and show positive clonal selection in oligodendrocytes (OLs) and OL precursor cells (OPCs), but are exceedingly rare in neurons and other lineages. Combined spatial genotyping and transcriptomic analysis enabled dissection of cell autonomous and non-autonomous effects of second-hit mutations including clonal expansion of mutant OPCs with strong bias for cerebral gray matter versus white matter, suggesting that gray matter influences OPC proliferation and differentiation via non-cell autonomous interactions between OPCs and neurons. NF1-null OL lineage cells upregulate CDKN2A--a tumor suppressor frequently lost in NF1-mutant tumors--whereas brain cancers from these same individuals show CDKN2A loss across multiple cancer cell states, suggesting CDKN2A loss in OPCs is a critical step in tumor progression. Our findings reveal developmentally early, exquisitely lineage-specific NF1 somatic mutations in premalignant NF-1 brain, suggest cell autonomous and non-autonomous roles in clonal selection in brain, and suggest that clones harboring cancer driver mutations can persist over a lifetime in phenotypically normal tissues.
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A genome-scale ORF screen for resilience factors that protect the RPE and restore vision in aged mice
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https://www.biorxiv.org/content/10.64898/2026.09.29.755187v1?rss=1
2026-09-30doi:10.64898/2026.09.29.755187Cold Spring Harbor Laboratory2026-09-30
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Pangenome-resolved polymorphic transposable elements reveal human regulatory evolution in action
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https://www.biorxiv.org/content/10.64898/2026.09.24.754167v1?rss=1
2026-09-30doi:10.64898/2026.09.24.754167Cold Spring Harbor Laboratory2026-09-30
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Examining the potential of growing frafra potatoes in polypropylene sacs as a food security strategy in the Bolgatanga Municipality of the Upper East Region, Ghana.
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https://www.biorxiv.org/content/10.64898/2026.09.24.754242v1?rss=1
2026-09-30doi:10.64898/2026.09.24.754242Cold Spring Harbor Laboratory2026-09-30
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Prion-induced heritable states in Caenorhabditis elegans
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https://www.biorxiv.org/content/10.64898/2026.09.27.753494v1?rss=1
2026-09-30doi:10.64898/2026.09.27.753494Cold Spring Harbor Laboratory2026-09-30
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Night-break photoperiod timing shapes growth trajectories, functional phenotype, and biomass partitioning in Cannabis sativa L. in a genotype-dependent manner
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https://www.biorxiv.org/content/10.64898/2026.09.29.755452v1?rss=1
2026-09-30doi:10.64898/2026.09.29.755452Cold Spring Harbor Laboratory2026-09-30
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Single-Cell Omics to Uncover Cell-Type-Specific Gene Regulatory Networks Driving Mucilage Production in Specialized Roots
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https://www.biorxiv.org/content/10.64898/2026.09.29.755433v1?rss=1
2026-09-30doi:10.64898/2026.09.29.755433Cold Spring Harbor Laboratory2026-09-30
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Neofunctionalised plastid translocon regulates chloroplast ageing in Arabidopsis
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https://www.biorxiv.org/content/10.64898/2026.09.29.755046v1?rss=1
2026-09-30doi:10.64898/2026.09.29.755046Cold Spring Harbor Laboratory2026-09-30
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AGROtools: A comprehensive modular cloning toolset for Agrobacterium strain engineering
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https://www.biorxiv.org/content/10.64898/2026.09.29.755435v1?rss=1
2026-09-30doi:10.64898/2026.09.29.755435Cold Spring Harbor Laboratory2026-09-30