Channel:  NCI Human Tumor Atlas Network

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

72 Articles

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors
Slyper, M., Porter, C. B. M., Ashenberg, O., Waldman, J., Drokhlyansky, E., Wakiro, I., Smillie, C., Smith-Rosario, G., Wu, J., Dionne, D., Vigneau, S., Jane-Valbuena, J., Napolitano, S., Su, M.-J., Patel, A. G., Karlstrom, A., Gritsch, S., Nomura, M., Waghray, A., Gohil, S. H., Tsankov, A. M., Jerby-Arnon, L., Cohen, O., Klughammer, J., Rosen, Y., Gould, J., Li, B., Nguyen, L., Wu, C. J., Izar, B., Haq, R., Hodi, F. S., Yoon, C. H., Hata, A. N., Baker, S. J., Suva, M. L., Bueno, R., Stover, E. H., Matulonis, U. A., Clay, M. R., Dyer, M. A., Collins, N. B., Wagle, N., Rotem, A., Johnson, B. E.
10.1101/761429 — Posted: 2020-03-30
VISTA: Virtual ImmunoSTAining for pancreatic disease quantification in murine cohorts
Ternes, L., Huang, G., Lanciault, C., Thibault, G., Riggers, R., Gray, J. W., Muschler, J., Chang, Y. H.
10.1101/2020.04.01.020842 — Posted: 2020-04-02
Single-cell analysis of human lung epithelia reveals concomitant expression of the SARS-CoV-2 receptor ACE2 with multiple virus receptors and scavengers in alveolar type II cells
Han, G., Sinjab, A., Treekitkarnmongkol, W., Brennan, P., Hara, K., Chang, K., Bogatenkova, E., Sanchez-Espiridion, B., Behrens, C., Gao, B., Girard, L., Zhang, J., Sepesi, B., Cascone, T., Byers, L., Gibbons, D. L., Chen, J., Moghaddam, S. J., Ostrin, E. J., Fujimoto, J., Shay, J., Heymach, J. V., Minna, J. D., Dubinett, S., Scheet, P. A., Wistuba, I. I., Hill, E., Telesco, S., Stevenson, C., Spira, A. E., Wang, L., Kadara, H.
10.1101/2020.04.16.045617 — Posted: 2020-04-17
Clinically adaptable polymer enables simultaneous spatial analysis of colonic tissues and biofilms
Macedonia, M. C., Drewes, J. L., Markham, N. O., Simmons, A. J., Roland, J. T., Vega, P. N., Scurrah, C. R., Coffey, R. J., Shrubsole, M. J., Sears, C. L., Lau, K. S.
10.1101/2020.04.15.030874 — Posted: 2020-04-17
Expansion Sequencing: Spatially Precise In Situ Transcriptomics in Intact Biological Systems
Alon, S., Goodwin, D., Sinha, A., Wassie, A., Chen, F., Daugharthy, E., Bando, Y., Kajita, A., Xue, A., Marrett, K., Prior, R., Cui, Y., Payne, A., Yao, C.-C., Suk, H.-J., Wang, R., Yu, C.-C., Tillberg, P., Reginato, P., Pak, N., Liu, S., Punthambaker, S., Iyer, E., Kohman, R., Miller, J., Lein, E., Lako, A., Cullen, N., Rodig, S., Helvie, K., Abravanel, D., Wagle, N., Johnson, B., Klughammer, J., Slyper, M., Waldman, J., Jane-Valbuena, J., Rozenblatt-Rosen, O., Regev, A., Church, G., Marblestone, A., Boyden, E. S.
10.1101/2020.05.13.094268 — Posted: 2020-05-15
Predictive modeling of single-cell DNA methylome data enhances integration with transcriptome data
Uzun, Y., Wu, H., Tan, K.
10.1101/2020.06.05.137000 — Posted: 2020-06-06
Online narrative guides for illuminating tissue atlas data and digital pathology images
Rashid, R., Chen, Y.-A., Hoffer, J., Muhlich, J. L., Lin, J.-R., Krueger, R., Pfister, H., Mitchell, R., Santagata, S., Sorger, P.
10.1101/2020.03.27.001834 — Posted: 2020-08-19
Single cell profiling reveals novel tumor and myeloid subpopulations in small cell lung cancer
Chan, J. M., Quintanal-Villalonga, A., Gao, V., Xie, Y., Allaj, V., Chaudhary, O., Masilionis, I., Egger, J., Chow, A., Walle, T., Mattar, M., Yarlagadda, D. V., Wang, J. L., Uddin, F., Offin, M., Ciampricotti, M., Bhanot, U. K., Lai, W. V., Bott, M. J., Jones, D. R., Ruiz, A., Hollmann, T., Poirier, J. T., Nawy, T., Mazutis, L., Sen, T., Pe'er, D., Rudin, C. M.
10.1101/2020.12.01.406363 — Posted: 2020-12-02
An Omic and Multidimensional Spatial Atlas from Serial Biopsies of an Evolving Metastatic Breast Cancer
Johnson, B. E., Creason, A. L., Stommel, J. M., Keck, J. M., Parmar, S., Betts, C. B., Blucher, A., Boniface, C., Bucher, E., Burlingame, E. A., Camp, T., Chin, K., Eng, J., Estabrook, J., Feiler, H. S., Hu, Z., Kolodzie, A., Kong, B. L., Labrie, M., Lee, J., Leyshock, P., Mitri, S., Patterson, J., Riesterer, J. L., Sivagnanam, S., Somers, J., Sudar, D., Thibault, G., Zheng, C., Nan, X., Heiser, L. M., Spellman, P. T., Thomas, G. V., Demir, E., Chang, Y. H., Coussens, L. M., Guimaraes, A. R., Corless, C., Goecks, J., Bergan, R., Mitri, Z., Mills, G. B., Gray, J. W.
10.1101/2020.12.03.408500 — Posted: 2021-07-16
Single-cell multi-omics reveals elevated plasticity and stem-cell-like blasts relevant to the poor prognosis of KMT2A-rearranged leukemia
Chen, C., Yu, W., Alikarami, F., Qiu, Q., Chen, C.-h., Flournoy, J., Gao, P., Uzun, Y., Fang, L., Yu, Y., Zhu, Q., Wang, K., Libbrecht, C., Felmeister, A., Rozich, I., Ding, Y.-y., Hunger, S. P., Wu, H., Brown, P. A., Guest, E. M., Barrett, D. M., Bernt, K. M., Tan, K.
10.1101/2020.12.06.413930 — Posted: 2020-12-07

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